Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00055 ATGGCCGTTGGAAAGAACAAGCGCATCTCCAAAGGGAAGAAGGGTGGCAAGAAGAAGGCAGCTGATCCCTTTTCCAAGAAGGATTGGTATGACATTAAGGCTCCCTCTGTTTTCCAAGTAAAAAATGTTGGCAAAACCCTCGTCAGCCGTACTCAGGGTACCAAGATTGCCTCTGAAGGACTCAAACATAGAGTCTTTGAGGTCTCATTGGCTGATCTTCAAGGAGATGAGGATCATGCATTCAGGAAGATAAGGCTGAGAGCTGAAGATATTCAAGGGAAGAATGTCCTGACGAATTTCTGGGGAATGGATTTCACCACAGACAAACTGAGGTCTTTGGTTCGAAAATGGCAAACACTTATTGAAGCCCATGTGGATGTGAAGACAACTGATAGTTACACATTGAGGATGTTTTGTATTGGATTCACCAAGAGAAGAGCTAACCAGGTGAAGAGAACCTGTTATGCCCAATCAAGCCAGATTAGACAGATACGTAGGAAGATGAGAGAGATCATGACCAACCAGGCAACATCCTGTGATTTGAAGGAGTTGGTCCGAAAGTTTATTCCTGAGATTATTGGAAAAGAAATTGAGAAGGCAACGTCTAGCATTTATCCTCTGCAGAACGTGTTTGTCCGAAAAGTCAAGATTCTTAAAGCTCCTAAGTTTGATCTTGGGAAACTGATGGAGGTTCATGGTGATTACTCAGAAGATGTTGGCACAAAGGTAGACAGACCTGCTGATGAAACAATTGCAGAGGAACCCACCGAAATTGTTGGAGCTTAA 786 0.4338 MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADETIAEEPTEIVGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00055 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vium349g00055 261 MobiDBLite consensus disorder prediction 1 15 - -
Vium349g00055 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vium349g00055 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Vium349g00055 261 MobiDBLite consensus disorder prediction 1 22 - -
Vium349g00055 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Vium349g00055 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00055 Vium-Chr349 483436 485912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00055 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 87.023 1.34e-166 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00055 K02984 - gmx:100813273 489.574