Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00054 ATGGCCTCTCATTCTCCCAAGAGAAAAGGCCTTTATCTTAATGCAGTCTCCCTCCTCCTTCTCATCTCCTTCATCAACCCTTCACACCAAGCCGAACACCCTTTTTCACCTCTTCCCCCTCTAAATCCAAGGCTCTCCAAAGCCTACACAGCACTCCAAGCATGGAAACACAAAATCACATCAGACCCCAAAAACTTCACCTTAAACTGGTGTGGCCCCAATGTTTGCAACTACACTGGCATATACTGTGCACCTGCCCCAGATGACCCTCACATCTACACTGTTGCTGGGGTTGACCTAAACCATGCCTCCATATCTGGCTCGTTGCCAGAAGAACTTGGCCTCTTAACTGACCTAGCACTTTTCCACATAAACTCCAACCGCTTCTGTGGTTCCCTCCCCAACAGCTTCGACCACCTAAATCTCCTCCATGAACTAGACATAAGCAACAACCAATTCTCAGGACCCTTCCCCGATGTTCTTCTCTGCATCTCCTCGTTAAAATACTTGGACATCAGATTCAATAACTTCTACGGCAACATTCCCTCGCGCCTCTTCGATCTCAAACTCGATGCCCTTTTCATCAACAACAACAACTTCAAATTCTCCCTGCCTGAGACCTTCGGCAACAGTCCTGCTTCTGTTGTTGTGTTTGCAAACAATGACCTCAATGGGTGTCTCCCTTCGAGTTTGGCCAAAATGAACGCTACCCTTAACGAGATTATCATCACCAACAGTGGCTTAACGGGCTGTTTGCCTAGTGAGATAGGGGATTTGGACAAAGTGACCGTGTTTGATGTGAGCTTCAACAAGCTTGTTGGAGATTTGCCCCAGTCCTTGGGGAAAATGAAGAGGTTGGAGCAGTTGAATGTGGCGCATAACATGCTTTCTGGCACCATTCCTGAGAGTGTGTGCATGTTGCCGAGGTTGGAGAATTTCACGTACTCGTACAACTACTTCTGCAGTGAGTCACCGGTGTGTCTCAAGTTGAAGGATAAGGATGATACCAAGAACTGCATTCCTTATAGGCCATTGCAAAGGTCACCCGATGAGTGTGCAGCTTTCTACAAATATCCTGTTCATTGCAGTGCCTTTGGTTGTGTATCTCCACCGCCGCCGCCACCACCACCACCTCCTCCTCCTCCACCACCACCTCCGCCGCCGCCTCCACCACCGGAAAAATACCACCACTATCCCTGA 1200 0.4883 MASHSPKRKGLYLNAVSLLLLISFINPSHQAEHPFSPLPPLNPRLSKAYTALQAWKHKITSDPKNFTLNWCGPNVCNYTGIYCAPAPDDPHIYTVAGVDLNHASISGSLPEELGLLTDLALFHINSNRFCGSLPNSFDHLNLLHELDISNNQFSGPFPDVLLCISSLKYLDIRFNNFYGNIPSRLFDLKLDALFINNNNFKFSLPETFGNSPASVVVFANNDLNGCLPSSLAKMNATLNEIIITNSGLTGCLPSEIGDLDKVTVFDVSFNKLVGDLPQSLGKMKRLEQLNVAHNMLSGTIPESVCMLPRLENFTYSYNYFCSESPVCLKLKDKDDTKNCIPYRPLQRSPDECAAFYKYPVHCSAFGCVSPPPPPPPPPPPPPPPPPPPPPPPEKYHHYP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00054 399 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 28 392 - -
Vium349g00054 399 FunFam Leucine-rich repeat extensin-like protein 1 49 210 - -
Vium349g00054 399 Gene3D Ribonuclease Inhibitor 214 337 IPR032675 -
Vium349g00054 399 SUPERFAMILY L domain-like 49 327 - -
Vium349g00054 399 MobiDBLite consensus disorder prediction 371 399 - -
Vium349g00054 399 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 228 324 - -
Vium349g00054 399 Gene3D Ribonuclease Inhibitor 46 213 IPR032675 -
Vium349g00054 399 Pfam Leucine rich repeat N-terminal domain 49 83 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00054 Vium-Chr349 476611 478498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00054 25 375 Leucine-rich Repeat extension Gene Families AT3G22800 65.909 1.32e-160 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00054 - - gmx:100813811 671.774