Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00053 ATGGGGAAGACGGGCAAATGGCTTAGAAACTTGTTGACCGGTAAGAAAGACAAGGAAAAGGAGAAGGAAAAATCTACATCTAACCTGAATTTTGCTTCAAATGGAACAGAAAACTCAGCCACTCCAACTTCCACAACCCCAAAGGAGAAAAAGAGATGGAGTTTCAGAAGATCATCAGCCACTTCCACAGCCACACTAGCATCAGTTTCCAAGGAATTGAATTTTGTAGAACCAACTGTCACTGCTTCGCAGGCAGTGCAAGCCGAAACTGATGATCAGAATGAGCAAAGGAAGCATGCCATGGCTGTGGCTGCTGCCACCGCAGCAGCAGCTGATGCTGCGGTGGCAGCTGCTGAGGCTGTAGCTGTTGTGATCCGTTTGACTTCTGCTTCCAATGCAACATCCAAAAGCATTAAAGAGGCTGCTGCCATTAAAATCCAATCAGTCTTTCGGTCTCATTTGGCAAGGAAAGCATTGTGCGCTCTAAGAGGACTGGTGAAGTTGCAGGCACTGGTAAGGGGTCATTTGGTGAGAAAACAGGCCAAGGAAACACTGAGATGCATGCAGGCTTTGGTGACGGCACAAGCTAGAGCTCGTATTCAGAGGATCCGAATGGGTTCAGAAGGAATTCCTAATCAACAACAAAGAAAAGCCACAGATGATGATCTGTTCAGGCAAATATATAATGAAATGGAGAGAGGCTTGGAAGACAATATCAAGATTGTTGAGATGGATGTGGGTGAAACAAAAAGTGATTGCAGAAGTAGAAGCAGCAGTGTATATTATCATGGGCATCAAGAACAGCATGAACATAGATTTTCCACACATTATTCAACAAATGGTTCCTACTCAAAGGAAGAAAACTACAAGGTGTCACCAGCTCCATCAGCATTGACAGAGTTGAGCACAAGAGAATGCAGTGGCCATTTTGAGGACTGTTTCAGCACAGCCCAAAGCAGCCCTCAGTTCCACTCTGCTGTGTCAAGAACAGAAAATTCAAAGCACCCTTTTTCTTTTCCAAGGCCAGCTTATGCAGAGTCTTTGTGCCATGACTACCCTCTGTTTCCAAATTACATGGCTAACACTGAATCATCAAGGGCCAAAGTCAGATCGCATAGTGCACCGAAACAAAGACCCGATTCATTTGAGAGGCAACCAAGCCGCCGAAGAGCTTCAGTAGAGGGAAGAAATGTCCCAAGGCCAATTAGGATGCAAAGGTCATCTTCACATGTGAGTGCCACTGCTCAAAACTATCAATATCCTTGGTCAATCAAGCTTGACAGATCCGCAGTTTCACTCAAAGACAGCGAGTGTGGCTCTACAAGTACAGTGCTCACTAACACTAATTATTGCAGATCTCTTGTTGCATTTGACCCACGTGGAGATAGGTACTGA 1395 0.4516 MGKTGKWLRNLLTGKKDKEKEKEKSTSNLNFASNGTENSATPTSTTPKEKKRWSFRRSSATSTATLASVSKELNFVEPTVTASQAVQAETDDQNEQRKHAMAVAAATAAAADAAVAAAEAVAVVIRLTSASNATSKSIKEAAAIKIQSVFRSHLARKALCALRGLVKLQALVRGHLVRKQAKETLRCMQALVTAQARARIQRIRMGSEGIPNQQQRKATDDDLFRQIYNEMERGLEDNIKIVEMDVGETKSDCRSRSSSVYYHGHQEQHEHRFSTHYSTNGSYSKEENYKVSPAPSALTELSTRECSGHFEDCFSTAQSSPQFHSAVSRTENSKHPFSFPRPAYAESLCHDYPLFPNYMANTESSRAKVRSHSAPKQRPDSFERQPSRRRASVEGRNVPRPIRMQRSSSHVSATAQNYQYPWSIKLDRSAVSLKDSECGSTSTVLTNTNYCRSLVAFDPRGDRY 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00053 464 ProSiteProfiles IQ motif profile. 139 167 IPR000048 GO:0005515
Vium349g00053 464 MobiDBLite consensus disorder prediction 365 412 - -
Vium349g00053 464 Pfam Protein of unknown function (DUF4005) 321 397 IPR025064 -
Vium349g00053 464 MobiDBLite consensus disorder prediction 369 396 - -
Vium349g00053 464 MobiDBLite consensus disorder prediction 10 26 - -
Vium349g00053 464 PANTHER IQ-DOMAIN 5-RELATED 1 394 - -
Vium349g00053 464 MobiDBLite consensus disorder prediction 27 48 - -
Vium349g00053 464 Gene3D - 137 192 - -
Vium349g00053 464 ProSiteProfiles IQ motif profile. 163 190 IPR000048 GO:0005515
Vium349g00053 464 Pfam IQ calmodulin-binding motif 166 182 IPR000048 GO:0005515
Vium349g00053 464 Pfam IQ calmodulin-binding motif 141 159 IPR000048 GO:0005515
Vium349g00053 464 MobiDBLite consensus disorder prediction 264 288 - -
Vium349g00053 464 MobiDBLite consensus disorder prediction 1 57 - -
Vium349g00053 464 SMART iq_5 138 160 IPR000048 GO:0005515
Vium349g00053 464 SMART iq_5 161 182 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00053 Vium-Chr349 463613 466009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00053 1 452 IQD Protein Family AT4G14750 45.474 5.46e-98 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00053 - - gmx:100817667 708.368