Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00051 ATGGCTGGTAGGTTGCCTGGTGTTGGGTTGCTTGCAAGGAAGAGAGCAGAGAGCAATCACAGACATGAAAATCGACACAACTATTACCTAAAGGAATCCCTCCACCCACCTTCCATTCCTCTCACTGTCTTAGATGAAACTGCTCTCAAGGCCAGGCAGAGGCTTCACCACAAGCTTGGACACTTCTTTTCCTCCTACAGATCAGGTGAGAATCCGAGAAAAAAAGAGGGAAAAGTGAGGGAAAACAGTAACCAGAAGAAGGACGGAGGATTAGGTCGGAAATTATTAGAGAGTTCGTGGTTATTGCGTGGCAACAAGGTTAAGGAAGAGAGAAAAGTGTGTGCTGTTTGCCTTGAAGAGTTGGGAGAAGAACATGTTATGAACCTTTCATGCTCTCACAAGTATCATTCTGCATGTCTTCTTCCATGGCTTGCTGCTCATCCCCACTGCCCTTATTGTCGAACTCCAGTACAACTCTGA 480 0.4604 MAGRLPGVGLLARKRAESNHRHENRHNYYLKESLHPPSIPLTVLDETALKARQRLHHKLGHFFSSYRSGENPRKKEGKVRENSNQKKDGGLGRKLLESSWLLRGNKVKEERKVCAVCLEELGEEHVMNLSCSHKYHSACLLPWLAAHPHCPYCRTPVQL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00051 159 Pfam Ring finger domain 113 154 IPR001841 -
Vium349g00051 159 MobiDBLite consensus disorder prediction 68 91 - -
Vium349g00051 159 ProSiteProfiles Zinc finger RING-type profile. 114 154 IPR001841 -
Vium349g00051 159 MobiDBLite consensus disorder prediction 64 91 - -
Vium349g00051 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 158 IPR013083 -
Vium349g00051 159 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 46 155 - -
Vium349g00051 159 SUPERFAMILY RING/U-box 113 157 - -
Vium349g00051 159 MobiDBLite consensus disorder prediction 1 25 - -
Vium349g00051 159 SMART ring_2 114 153 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00051 106 157 C3H Transcription Factor Family AT1G49850 41.509 7.45e-10 53.9