Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00048 ATGAACGTCGGCGGAACCGCCACCTTCCGATCCATCCTCGACAAGCACCTCAACCAACTCACGGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGGGATGCGCAGGCCTTCATGGAACAAATCGCAGGCGATCCAACAGGTCATTTCCCTCAAAGCGCTTCTCGAACCTTCCGACGATGATTCCCCTCCTCCTCCTCCCCCCATGCACCACCATCCTCATGCTCCTCAACCTCAAGCCAATTTGACTCAGCCTCCGCCCAAGGCCCCTCCTCCTGAGGAACCCGCCTTTCTCGCCGCCGACGACATTCAGAAATCTGCCTCTTCTGGGGAAAAACCTACGGAGACTAATGACACCAACACCAACGCTAACGTTGCTAGCCCCAGGGGCTGTGCTACTAGTGGATCAATTGGCCAAATGACAATTTTCTATTGTGGTAAGGTGAACGTCTATGATGGAGTCCCACCTGATAAGGCACGGGCAATCATGCAGCTTGCTGCAAGTCCTGTCCAGTTTACTCAGGATGATCCTTTACATGGACATGCATCAGCTTGGTCTTCTCCTTGCCACTTACCGATGGATAAGGATGTCCTCATCCCTGTTGATACAGCTATCCTTCAGGTTGCTCAAGCAGGTAATAAGATGGTGGAATATCCTCTGCAATACAGAGAGAAAGGGAGCCTAACTCGTGATGCTGATATAGATGGTCAAGCAAGCAGAAAAGTGTCATTGCAGCGATATCGTGAAAAGCGTAAGGACAGGGGAAGATTTAAAGGCAAGAAATTGACTGGAATTACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAAGGTCCATGCCTCAAATGGGAATTCAAGCCGTAGTAGCACTAGTTCTCCACCACAGCCTAGAGTGCCTCTAGCTTCCAGTGGTTCAGCTGACAACCAGCTCAAAGTTGCCCTTCCCATTGATCTCAATGACAAAGATGTTCAAGAATGCTAA 1011 0.4946 MNVGGTATFRSILDKHLNQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPSDDDSPPPPPPMHHHPHAPQPQANLTQPPPKAPPPEEPAFLAADDIQKSASSGEKPTETNDTNTNANVASPRGCATSGSIGQMTIFYCGKVNVYDGVPPDKARAIMQLAASPVQFTQDDPLHGHASAWSSPCHLPMDKDVLIPVDTAILQVAQAGNKMVEYPLQYREKGSLTRDADIDGQASRKVSLQRYREKRKDRGRFKGKKLTGITSSNFEMYLNLPVKVHASNGNSSRSSTSSPPQPRVPLASSGSADNQLKVALPIDLNDKDVQEC 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00048 336 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 286 IPR040390 -
Vium349g00048 336 ProSiteProfiles Tify domain profile. 141 176 IPR010399 -
Vium349g00048 336 Pfam Jas motif 245 262 IPR018467 -
Vium349g00048 336 MobiDBLite consensus disorder prediction 67 102 - -
Vium349g00048 336 SMART tify_2 141 176 IPR010399 -
Vium349g00048 336 MobiDBLite consensus disorder prediction 115 139 - -
Vium349g00048 336 MobiDBLite consensus disorder prediction 58 139 - -
Vium349g00048 336 MobiDBLite consensus disorder prediction 290 319 - -
Vium349g00048 336 Pfam tify domain 147 175 IPR010399 -
Vium349g00048 336 MobiDBLite consensus disorder prediction 246 268 - -
Vium349g00048 336 MobiDBLite consensus disorder prediction 290 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00048 Vium-Chr349 378987 384914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00048 1 291 Tify Gene Family AT4G14720 47.869 1.67e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium349g00048 tify 9.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00048 - - gmx:100813937 488.034