Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00047 ATGAACGTCGGCGGAACCGCCACCTTCCGATCCATCCTCGACAAGCACCTCAACCAACTCACGGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGGGATGCGCAGGCCTTCATGGAACAAATCGCAGGCGATCCAACAGGTCATTTCCCTCAAAGCGCTTCTCGAACCTTCCGACGATGATTCCCCTCCTCCTCCTCCCCCCATGCACCACCATCCTCATGCTCCTCAACCTCAAGCCAATTTGACTCAGCCTCCGCCCAAGGCCCCTCCTCCTGAGGAACCCGCCTTTCTCGCCGCCGACGACATTCAGAAATCTGCCTCTTCTGGGGAAAAACCTACGGAGACTAATGACACCAACACCAACGCTAACGTTGCTAGCCCCAGGGGCTGTGCTACTAGTGGATCAATTGGCCAAATGACAATTTTCTATTGTGGTAAGGTGAACGTCTATGATGGAGTCCCACCTGATAAGGCACGGGCAATCATGCAGCTTGCTGCAAGTCCTGTCCAGTTTACTCAGGATGATCCTTTACATGGACATGCATCAGCTTGGTCTTCTCCTTGCCACTTACCGATGGATAAGGATGTCCTCATCCCTGTTGATACAGCTATCCTTCAGGTTGCTCAAGCAGGTAATAAGATGGTGGAATATCCTCTGCAATACAGAGAGAAAGGGAGCCTAACTCGTGATGCTGATGGTCAAGCAAGCAGAAAAGTGTCATTGCAGCGATATCGTGAAAAGCGTAAGGACAGGGGAAGATTTAAAGGCAAGAAATTGACTGGAATTACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAAGGTCCATGCCTCAAATGGGAATTCAAGCCGTAGTAGCACTAGTTCTCCACCACAGCCTAGAGTGCCTCTAGCTTCCAGTGGTTCAGCTGACAACCAGCTCAAAGTTGCCCTTCCCATTGATCTCAATGACAAAGATGTTCAAGAATGCTAA 1005 0.4965 MNVGGTATFRSILDKHLNQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPSDDDSPPPPPPMHHHPHAPQPQANLTQPPPKAPPPEEPAFLAADDIQKSASSGEKPTETNDTNTNANVASPRGCATSGSIGQMTIFYCGKVNVYDGVPPDKARAIMQLAASPVQFTQDDPLHGHASAWSSPCHLPMDKDVLIPVDTAILQVAQAGNKMVEYPLQYREKGSLTRDADGQASRKVSLQRYREKRKDRGRFKGKKLTGITSSNFEMYLNLPVKVHASNGNSSRSSTSSPPQPRVPLASSGSADNQLKVALPIDLNDKDVQEC 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00047 334 ProSiteProfiles Tify domain profile. 141 176 IPR010399 -
Vium349g00047 334 Pfam tify domain 147 175 IPR010399 -
Vium349g00047 334 Pfam Jas motif 243 260 IPR018467 -
Vium349g00047 334 MobiDBLite consensus disorder prediction 288 334 - -
Vium349g00047 334 MobiDBLite consensus disorder prediction 67 102 - -
Vium349g00047 334 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 284 IPR040390 -
Vium349g00047 334 SMART tify_2 141 176 IPR010399 -
Vium349g00047 334 MobiDBLite consensus disorder prediction 58 139 - -
Vium349g00047 334 MobiDBLite consensus disorder prediction 115 139 - -
Vium349g00047 334 MobiDBLite consensus disorder prediction 288 317 - -
Vium349g00047 334 MobiDBLite consensus disorder prediction 236 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00047 Vium-Chr349 378987 384914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00047 1 289 Tify Gene Family AT4G14720 47.869 7.61e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium349g00047 tify 9.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00047 - - gmx:100813937 481.1