Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00046 ATGAACGTCGGCGGAACCGCCACCTTCCGATCCATCCTCGACAAGCACCTCAACCAACTCACGGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGGGATGCGCAGGCCTTCATGGAACAAATCGCAGGCGATCCAACAGGTCATTTCCCTCAAAGCGCTTCTCGAACCTTCCGACGATGATTCCCCTCCTCCTCCTCCCCCCATGCACCACCATCCTCATGCTCCTCAACCTCAAGCCAATTTGACTCAGCCTCCGCCCAAGGCCCCTCCTCCTGAGGAACCCGCCTTTCTCGCCGCCGACGACATTCAGAAATCTGCCTCTTCTGGGGAAAAACCTACGGAGACTAATGACACCAACACCAACGCTAACGTTGCTAGCCCCAGGGGCTGTGCTACTAGTGGATCAATTGGCCAAATGACAATTTTCTATTGTGGTAAGGTGAACGTCTATGATGGAGTCCCACCTGATAAGGCACGGGCAATCATGCAGCTTGCTGCAAGTCCTGTCCAGTTTACTCAGGATGATCCTTTACATGGACATGCATCAGCTTGGTCTTCTCCTTGCCACTTACCGATGGATAAGGATGTCCTCATCCCTGTTGATACAGCTATCCTTCAGGTTGCTCAAGCAGATAAGATGGTGGAATATCCTCTGCAATACAGAGAGAAAGGGAGCCTAACTCGTGATGCTGATATAGATGGTCAAGCAAGCAGAAAAGTGTCATTGCAGCGATATCGTGAAAAGCGTAAGGACAGGGGAAGATTTAAAGGCAAGAAATTGACTGGAATTACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAAGGTCCATGCCTCAAATGGGAATTCAAGCCGTAGTAGCACTAGTTCTCCACCACAGCCTAGAGTGCCTCTAGCTTCCAGTGGTTCAGCTGACAACCAGCTCAAAGTTGCCCTTCCCATTGATCTCAATGACAAAGATGTTCAAGAATGCTAA 1008 0.495 MNVGGTATFRSILDKHLNQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPSDDDSPPPPPPMHHHPHAPQPQANLTQPPPKAPPPEEPAFLAADDIQKSASSGEKPTETNDTNTNANVASPRGCATSGSIGQMTIFYCGKVNVYDGVPPDKARAIMQLAASPVQFTQDDPLHGHASAWSSPCHLPMDKDVLIPVDTAILQVAQADKMVEYPLQYREKGSLTRDADIDGQASRKVSLQRYREKRKDRGRFKGKKLTGITSSNFEMYLNLPVKVHASNGNSSRSSTSSPPQPRVPLASSGSADNQLKVALPIDLNDKDVQEC 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00046 335 MobiDBLite consensus disorder prediction 289 318 - -
Vium349g00046 335 ProSiteProfiles Tify domain profile. 141 176 IPR010399 -
Vium349g00046 335 Pfam tify domain 147 175 IPR010399 -
Vium349g00046 335 Pfam Jas motif 244 261 IPR018467 -
Vium349g00046 335 MobiDBLite consensus disorder prediction 238 257 - -
Vium349g00046 335 MobiDBLite consensus disorder prediction 289 322 - -
Vium349g00046 335 MobiDBLite consensus disorder prediction 67 102 - -
Vium349g00046 335 SMART tify_2 141 176 IPR010399 -
Vium349g00046 335 MobiDBLite consensus disorder prediction 115 139 - -
Vium349g00046 335 MobiDBLite consensus disorder prediction 58 139 - -
Vium349g00046 335 MobiDBLite consensus disorder prediction 238 267 - -
Vium349g00046 335 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 285 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00046 Vium-Chr349 378987 384914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00046 1 290 Tify Gene Family AT4G14720 48.026 1.14e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium349g00046 tify 9.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00046 - - gmx:100813937 494.582