Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00045 ATGAACGTCGGCGGAACCGCCACCTTCCGATCCATCCTCGACAAGCACCTCAACCAACTCACGGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGGGATGCGCAGGCCTTCATGGAACAAATCGCAGGCGATCCAACAGGTCATTTCCCTCAAAGCGCTTCTCGAACCTTCCGACGATGATTCCCCTCCTCCTCCTCCCCCCATGCACCACCATCCTCATGCTCCTCAACCTCAAGCCAATTTGACTCAGCCTCCGCCCAAGGCCCCTCCTCCTGAGGAACCCGCCTTTCTCGCCGCCGACGACATTCAGAAATCTGCCTCTTCTGGGGAAAAACCTACGGAGACTAATGACACCAACACCAACGCTAACGTTGCTAGCCCCAGGGGCTGTGCTACTAGTGGATCAATTGGCCAAATGACAATTTTCTATTGTGGTAAGGTGAACGTCTATGATGGAGTCCCACCTGATAAGGCACGGGCAATCATGCAGCTTGCTGCAAGTCCTGTCCAGTTTACTCAGGATGATCCTTTACATGGACATGCATCAGCTTGGTCTTCTCCTTGCCACTTACCGATGGATAAGGATGTCCTCATCCCTGTTGATACAGCTATCCTTCAGGTTGCTCAAGCAGATAAGATGGTGGAATATCCTCTGCAATACAGAGAGAAAGGGAGCCTAACTCGTGATGCTGATGGTCAAGCAAGCAGAAAAGTGTCATTGCAGCGATATCGTGAAAAGCGTAAGGACAGGGGAAGATTTAAAGGCAAGAAATTGACTGGAATTACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAAGGTCCATGCCTCAAATGGGAATTCAAGCCGTAGTAGCACTAGTTCTCCACCACAGCCTAGAGTGCCTCTAGCTTCCAGTGGTTCAGCTGACAACCAGCTCAAAGTTGCCCTTCCCATTGATCTCAATGACAAAGATGTTCAAGAATGCTAA 1002 0.497 MNVGGTATFRSILDKHLNQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPSDDDSPPPPPPMHHHPHAPQPQANLTQPPPKAPPPEEPAFLAADDIQKSASSGEKPTETNDTNTNANVASPRGCATSGSIGQMTIFYCGKVNVYDGVPPDKARAIMQLAASPVQFTQDDPLHGHASAWSSPCHLPMDKDVLIPVDTAILQVAQADKMVEYPLQYREKGSLTRDADGQASRKVSLQRYREKRKDRGRFKGKKLTGITSSNFEMYLNLPVKVHASNGNSSRSSTSSPPQPRVPLASSGSADNQLKVALPIDLNDKDVQEC 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00045 333 MobiDBLite consensus disorder prediction 287 316 - -
Vium349g00045 333 ProSiteProfiles Tify domain profile. 141 176 IPR010399 -
Vium349g00045 333 Pfam tify domain 147 175 IPR010399 -
Vium349g00045 333 MobiDBLite consensus disorder prediction 235 264 - -
Vium349g00045 333 MobiDBLite consensus disorder prediction 67 102 - -
Vium349g00045 333 SMART tify_2 141 176 IPR010399 -
Vium349g00045 333 MobiDBLite consensus disorder prediction 115 139 - -
Vium349g00045 333 MobiDBLite consensus disorder prediction 41 139 - -
Vium349g00045 333 Pfam Jas motif 242 259 IPR018467 -
Vium349g00045 333 MobiDBLite consensus disorder prediction 287 333 - -
Vium349g00045 333 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 283 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00045 Vium-Chr349 378987 384914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00045 1 288 Tify Gene Family AT4G14720 48.026 5.06e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium349g00045 tify 9.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00045 - - gmx:100813937 487.648