Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00039 ATGAATCCTCAAGGTCGAGTGAAGGAAGAGTTTCTTGGAGAAAGTTCTTCCTTTTATGGTGGCTATGATCCGCCCCCGATAATGATTGTTCCTCAACCGGTTAAGGGGCTTCATGAAACTGGTCCTCCGCCATTCCTAACAAAAACGTACGACATTGTTGATGACCCTTCCACTGACCATATAATTTCCTGGAGCAAGGGGAATAATAGCTTCATTGTGTGGGATCCACAGGCCTTTTCCGTGACCCTTTTGCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCCGGCAACTCAACACCTATGGGTTTAAAAAGGTTGATCCAGATAAGTGGGAGTTTGCTAATGAGATGTTTCTCAGAGGGCAAAGGATTCTTCTGAAGAGCATTAGAAGGCGGAAAACAAATCACCAATCTCATGCGATGCAGCAAGCGGTGGATCCTTGTGTTGAGGTGGGGCTGTTTGGATTAGATGGAGAAGTCGATAGGTTGAAGCGTGACAGGCAAGTTCTTATGGCGGAGTTGGTGAAACTCAGACAACAGCAACAGAATACTAGAGTTCACATTCAAGCAATGGAAGGAAGGCTTAAAAGGACTGAGCAGAAACAGCAGCAGACGATGAATTTCTTAGCCAGGGCAATGCAGAATCCCAACTTCGTGCAACAATTGGTTCAGCAAAAGGAGCTTAGAAAGGAGCTCAAGGAAGCTTTTTCTAAGAAGAGGAGGTGTCTTGATCAAGGGCCTAGTAATGTTGTTGAAGTAGGAGAGTTGGCTTGCGGTGAAGAGTACTCAAGTTTGGTTAAACTTGAAGCACAAGTGTTGGATTTTGAGGTACCAGATATTGACCTTGGTTTGAATCTGGGGGAGCAAATTGGAAGCCAGAAGAGAATGGAGGGAGATTATGTTCAAGTTGAAAGTATGGATAAAGATATTGATGAAGTGTTTTGGCAAGATTTGCTGAATGAGGGCATTGAAGAACAAGGTGTAATGGGTGTAGATGTATTGGCTCAGCAACTTGGTTATTTGGCCTCAAGTTCCAAATAG 1047 0.4394 MNPQGRVKEEFLGESSSFYGGYDPPPIMIVPQPVKGLHETGPPPFLTKTYDIVDDPSTDHIISWSKGNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGQRILLKSIRRRKTNHQSHAMQQAVDPCVEVGLFGLDGEVDRLKRDRQVLMAELVKLRQQQQNTRVHIQAMEGRLKRTEQKQQQTMNFLARAMQNPNFVQQLVQQKELRKELKEAFSKKRRCLDQGPSNVVEVGELACGEEYSSLVKLEAQVLDFEVPDIDLGLNLGEQIGSQKRMEGDYVQVESMDKDIDEVFWQDLLNEGIEEQGVMGVDVLAQQLGYLASSSK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00039 348 FunFam Heat shock transcription factor 1 38 135 - -
Vium349g00039 348 Coils Coil 162 182 - -
Vium349g00039 348 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium349g00039 348 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium349g00039 348 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium349g00039 348 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium349g00039 348 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium349g00039 348 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium349g00039 348 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Vium349g00039 348 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 242 IPR027725 -
Vium349g00039 348 Gene3D - 37 136 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00039 Vium-Chr349 347812 349672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00039 25 347 HSF AT3G22830 53.719 1.97e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium349g00039 HSF_DNA-bind 1.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00039 K09419 - gmx:100809515 551.977