Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00033 ATGGAGGAAGAGAGTGAATGCTTCGAGTGCCTCCAACTTCGAATAAAGTCGGATTTCTCGGAGCAAGTCTTCTTCAATTATGCCATCTCCAATTCTGCTTTTCCTTTCGGATCCTCAGCTATCGTCAATATTTCTGGTACAACTGATGTAGAAGCTTCGGGCGGTCAATTTATATTGCAATACATGCCGAGTCGTGATAAGAATTGTTTTATCAATTATGTAAATGAATATAGTTTGGACAGTGGTGAAATTACTACTGGGAGTGGTGATCCTGATATTGGTGGAAGTAAAAATGATGTTATTAAGGGTAGAATTACTTCATCAGATGATTCTGACTGTGACAAAGTTTTTTCTGGAAACACAAATTGTAGTCATTCTGGAAGGTTTTCTTGCTTGAGGACAATCACCTCACTCTTGCCGATTGCTCATGTGGGAAATTCTTCCTATTCTACGTTTCAAAAGGTGTCCTCTGATTTCTTGTCTGGGCTAATCGAAGACCATGTCTTAAATTCACTTGATCTCTTCATTGAAGAGAAAGGATCTGGACGGGACAGTATAAATTTCCTGGGTTTAATTGGGTTGCCATCATTTGAAGAGGATGCTTTGCCAGGCTCTTTGAGGCATCCTAACATAGCTCCAGTCCTTGCAATTTTTAAAACATCCGATCATGTTAATGTGGTGCTTCCAAAGACTCCATACAACTTGGAAAGTATTCTTCATTTTAATCCCAATTCCTTAAAATCTGATTGGCATAGAAGATTTCTTATATATCAACTACTCTCAGCCTTATCGTACCTACATGGTTTAGGGGTTTCTCATGGTAATATATGCCCATCCAATATCATGTTGAGTGATTCGTTATGGTGTTGGCTGAGATTATGGAATGAGCCCGTATTGGAATCTAATTTAACTTTGCAGGAGAGTGAAAGCGTTAATTCTGAACCTGCAAGAATTGGTTGTTGTAATGTTGGTTGTCATTCTTATGGCCTTTATGCTGATCTAAAGCTTTCTCCAACAATAGATTGGCATGCTTGCTTTCAGCAGTGGTGGAGAGGAGAACTAAGTAATTTTGAATATTTACTCATCTTAAACAGATTAGCAGGAAGAAGGTGGGGGGACCATACATTTCATCCAGTAATGCCTTGGGTAATTGATTTTAGCTCAAAACCTGATGATAATTGTGATGTAGGGTGGCGCGACTTGAGCAAGAGTAAATGGCGCTTGGCAAAAGGTGATGAACAATTGGATTTCACATATTCAACATCTGAAATCCCTCATCATGTATCAGATGAATGTCTGTCTGAATTGGCTGTCTGCAGTTATAAAGCAAGAAGACTGCCTTTGAGTGTTCTGAGAATGGCTGTTCGTTCTGTGTATGAACCTAATGAGTATCCTTCCACAATGCAGAGGCTCTATCAATGGACTCCCGATGAATGCATTCCAGAGTTTTACTGTGATGCTCAAATTTTTATATCAATACATGATGGTATGGCTGATTTGGCTGTACCCTCTTGGGCAGAGAGTCCTGAGGATTTCATTAAATTGCATTTTGATGCATTAGAAAGTGATAGGGTGTCATTTCAGCTCCATCATTGGATAGATATAACCTTTGGTTACAAAATGTCTGGCCAGGAAGCTATCGCTGCTAAGAATGTTATGCTTCCTCTATCAGAACCCTCAATGCCAAGATCAACAGGACGTCGTCAGCTCTTTACACAACCACACCCCATACGTCATGCCACTACCAAAACAAAACGTCACAGTTCCAATAAATATGCCAAAGTTTGGAGTCAGGCATATGAAATGCACCGAGAGACATCTCTTCTAGCTGGAACTGCTTATCTACAAGAACTAGAGCAAGCATCTAAATTTTCTGAACATGCTAGGCATTTGAATGCCTGTTACCATTATCCCTCAAATCAAATGACGGGGAAGAACATCTCATCTTTGAGAGATCCAACAACAAAGACATTTAGTGAAAATATAAGCAAACTATCTTTGATTGACAGAAATTACCAGGTACCTTATAAAATGAATCTAATTTCTTTTCTTCAACATATGAAAGAGGAAGATGAAGGCTCCTTAGGGTATCCAGACTTGCTACTCTGGAAGCAGAAATTATCTTCTTCAAGACTTTGCTCTGAAGATGTTGCTGGGGACATATTTTCTATTGGTTGTCTCTTGGCTGAACTTCATCTTTCCAGGCCACTCTTTGATCCAATCTCATTGTCGATATACTTGGAAGATGGAACCTTTCCAGGATTTCTGCAGGATCTACCTCCTAATATTAGATTACTTGTTGAAGCATGCATCCAAAAGGATTGGACGAGGAGGCCTTCTACAAAATTTCTACTGGAATCACCTTATTTTCCAAAGAGTGTCAAGTCCTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTAGCTAAAGACGAAACCCGTCTTCGTTATGCTGCAAATCTTGCAAAGTGTGGAGCCCTCAGGGAAATGGGTGCATTCGCAACTGAAATGTGCACTACTTATTGCTTACCGCTTATTGTGAATGCTGTGAGTGATGTTGAAGCCGAATGGGCATATATGCTTCTGAAGGAATTCATGAAATGCTTAACAGTGCCAGCAGTGAAAACATTAATCCTGCCAACAATACAGAAAATTTTACAGACCACAGGTTATTTACGATTAAAGGTTGCACTTCTACAAGATTCATTTGTGAGGGAAATATGGAATCAAGTTGGTAAACAAGCATACCTGGAAACTATTCATCCATTGGTCTTGTCAAACTTGTACAATTCTCCAGATAAAAGTTCAGCTGCCTCTGCTTCAGTGCTTCTAATCAGTTCTAGCGAGGAGCTTGGAGTACCTATTACCATCCATCAGACTATCTTGCCTCTTGTTCACTGCTTTGGGAAAGGACTATGTGCTGATGGCATTGATGTGCTGGTCAGAATTGGTGGCATTTTTGGGGAATTGTTTATTGTCAAACAGTTGGTACCTTTACTCAAAAATGTTGTTCGTTCCTTCATTGATGTGTCATGCATGAATAAGCCTGATCCTGTCCAGAGTTGGACTGCTTTGGCACTTATTGATTGCATGATGACTTTAGATGGCCTTGTAGCTTACCTGACAGAAGAGGTCATTGTAAAGCAGCTTCTTGAAGATCTAAGTTGCATACACATAGGGGTTCTTATGCAGAAACATATGGACATTGCAGTGCTTCAGATTGTTGCCTCTACCCTTTTTGGAATTTGTCAGCGGATTGGAGCAGATTTAACAGCATTGCATATTCTTCCAAAACTTAAAGAACTATTTGATGAGCTGGCTTTCTCCCAGGAAGTTTCTAAAGGTTCAACTTCTGTTAGCAAAAACTTGAAGGCTAGCAAAATAAAAATTGGAGGGGACTTGCATATTGAAAGTCGTACGGATCTAGTGTTGGTCCTCTATCCTTCCTTTGCATCTCTTCTTGGGATAGAGAAACTTCGTCAATGCTGTGCTACTTGGTTGATTCTTGAACAGTATCTTCTACATCATCATAATTGGAAGTGGGAATATGCAGGAGAATCATCAAAAAATGGTTCAGAAATTATTCTTGCCAGAAGACCGGTAATATCCCAAGGATTTACATCTGAATACAATCCTGCAAAGCTGTTGCTTAATGGAGTTGGATGGTCAATTCCACAATCCCAAGGAAGTAGAAGTGCCAGAAATTTGATTCCTCAAAGACGACCATTTAAAGTTCATCAAAGTCCAGTAGTAGTGCATGAAGGAATGACATACCAAATGAACCAAGAACCCTGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGGCCTGAATTTCTTGGGAGGGTGGGGATTCAGAAAGATGATCTGCCATGGAAGATCAGAGCATCTGTTATATACTCTATACGCGCACATCATGGAGCTCTAAGGTCTCTGGCTGTTAACCAAGATGAATGCACTGTTTTTACTGCTGGAATTGGTCAAGGATACAAGGGAACTGTTCAGAAATGGGAATTGAGCCGAACTAACTGTTTGTCCGGCTATTATGGCCATGAGGAGGTTGTGAATGATATTTGCGTCTTATCATCAAGTGGAAGAGTGGCATCTTGTGATGGAACAATTCACATTTGGAATAGCCAAACAGGGAAGCAAATATTAGTATTTGCTGAGTCGCAAACAGAATCTAGCCATCCTACAAGCCATCCATCCTCTGGATCAAAGATAAATAGTGACCAGGCAAATGTGCTGAATTTGAATACACTATCAAATGGAATATTGTCTAGTGCTTTCGATTCAAGTCTTTATACTTGTATGCATCAATTATGCTCCACTGAAACTCTTGTAGTTGGCACTGGAAATGGTTCTCTGAGGTTCATTGATGTTTCTCGAGGTCAAAAGCTTCATATCTGGAGAGGCGAATCTACTGAATCTAGTTTTCCTTCACTTATTTCTGCCATCTGCTCTACTGGCTCTGACAAGATGCAAGCAGGTGGAATTTCCTCTTCGCCGTCTTTTATTGCAGCTGGGCTAAGTTCTGGGCACTGTAAATTATTTGATGCTAAGAGTGGAAATGTCATTAGCTCTTGGCGAGCTCACGATGGATACGTGACAAAGTTGGCAGCACCGGAAGAACATCTGCTCATTTCCAGCTCTCTGGACAGAACTTTACGAGTCTGGGATATAAGAATGAATTTGCCGTCGCAGCCCGTTATTTTCAGAGGTCATTCAGATGGTATATGCAGCTTCTCCGTTTGGGGCCATGATGTTATTTCGATTTCCCGGAGTAGGATTGGGCTTCTCTCCTTGTCAAAATCTGCCAATGAAGCAGATGGGCAGCACCATATTATCCCCCAGAGACTCTACGTTTCTGATAACGGTCAGAGAAGCTTGTCAGCGTTATCAAGTATTAGTATACTTCCATTCTCCCGATTGTTTCTCATTGGAACCGAAGATGGTTATCTGAGAATCTGTTGTTAA 4977 0.4067 MEEESECFECLQLRIKSDFSEQVFFNYAISNSAFPFGSSAIVNISGTTDVEASGGQFILQYMPSRDKNCFINYVNEYSLDSGEITTGSGDPDIGGSKNDVIKGRITSSDDSDCDKVFSGNTNCSHSGRFSCLRTITSLLPIAHVGNSSYSTFQKVSSDFLSGLIEDHVLNSLDLFIEEKGSGRDSINFLGLIGLPSFEEDALPGSLRHPNIAPVLAIFKTSDHVNVVLPKTPYNLESILHFNPNSLKSDWHRRFLIYQLLSALSYLHGLGVSHGNICPSNIMLSDSLWCWLRLWNEPVLESNLTLQESESVNSEPARIGCCNVGCHSYGLYADLKLSPTIDWHACFQQWWRGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVIDFSSKPDDNCDVGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCDAQIFISIHDGMADLAVPSWAESPEDFIKLHFDALESDRVSFQLHHWIDITFGYKMSGQEAIAAKNVMLPLSEPSMPRSTGRRQLFTQPHPIRHATTKTKRHSSNKYAKVWSQAYEMHRETSLLAGTAYLQELEQASKFSEHARHLNACYHYPSNQMTGKNISSLRDPTTKTFSENISKLSLIDRNYQVPYKMNLISFLQHMKEEDEGSLGYPDLLLWKQKLSSSRLCSEDVAGDIFSIGCLLAELHLSRPLFDPISLSIYLEDGTFPGFLQDLPPNIRLLVEACIQKDWTRRPSTKFLLESPYFPKSVKSSYLFLAPLQLVAKDETRLRYAANLAKCGALREMGAFATEMCTTYCLPLIVNAVSDVEAEWAYMLLKEFMKCLTVPAVKTLILPTIQKILQTTGYLRLKVALLQDSFVREIWNQVGKQAYLETIHPLVLSNLYNSPDKSSAASASVLLISSSEELGVPITIHQTILPLVHCFGKGLCADGIDVLVRIGGIFGELFIVKQLVPLLKNVVRSFIDVSCMNKPDPVQSWTALALIDCMMTLDGLVAYLTEEVIVKQLLEDLSCIHIGVLMQKHMDIAVLQIVASTLFGICQRIGADLTALHILPKLKELFDELAFSQEVSKGSTSVSKNLKASKIKIGGDLHIESRTDLVLVLYPSFASLLGIEKLRQCCATWLILEQYLLHHHNWKWEYAGESSKNGSEIILARRPVISQGFTSEYNPAKLLLNGVGWSIPQSQGSRSARNLIPQRRPFKVHQSPVVVHEGMTYQMNQEPWFWFPSPATIWDGPEFLGRVGIQKDDLPWKIRASVIYSIRAHHGALRSLAVNQDECTVFTAGIGQGYKGTVQKWELSRTNCLSGYYGHEEVVNDICVLSSSGRVASCDGTIHIWNSQTGKQILVFAESQTESSHPTSHPSSGSKINSDQANVLNLNTLSNGILSSAFDSSLYTCMHQLCSTETLVVGTGNGSLRFIDVSRGQKLHIWRGESTESSFPSLISAICSTGSDKMQAGGISSSPSFIAAGLSSGHCKLFDAKSGNVISSWRAHDGYVTKLAAPEEHLLISSSLDRTLRVWDIRMNLPSQPVIFRGHSDGICSFSVWGHDVISISRSRIGLLSLSKSANEADGQHHIIPQRLYVSDNGQRSLSALSSISILPFSRLFLIGTEDGYLRICC 1658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00033 1658 ProSiteProfiles Protein kinase domain profile. 138 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium349g00033 1658 Pfam Protein kinase domain 202 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium349g00033 1658 Gene3D - 1494 1658 IPR015943 GO:0005515
Vium349g00033 1658 Gene3D - 1289 1493 IPR015943 GO:0005515
Vium349g00033 1658 SUPERFAMILY Protein kinase-like (PK-like) 716 791 IPR011009 -
Vium349g00033 1658 PANTHER GH12955P 3 1658 - -
Vium349g00033 1658 Pfam WD domain, G-beta repeat 1343 1378 IPR001680 GO:0005515
Vium349g00033 1658 Pfam WD domain, G-beta repeat 1524 1560 IPR001680 GO:0005515
Vium349g00033 1658 SMART WD40_4 1341 1378 IPR001680 GO:0005515
Vium349g00033 1658 SMART WD40_4 1411 1460 IPR001680 GO:0005515
Vium349g00033 1658 SMART WD40_4 1463 1519 IPR001680 GO:0005515
Vium349g00033 1658 SMART WD40_4 1295 1338 IPR001680 GO:0005515
Vium349g00033 1658 SMART WD40_4 1522 1560 IPR001680 GO:0005515
Vium349g00033 1658 SMART WD40_4 1623 1658 IPR001680 GO:0005515
Vium349g00033 1658 ProSiteProfiles BEACH domain profile. 334 603 IPR000409 -
Vium349g00033 1658 SUPERFAMILY Protein kinase-like (PK-like) 204 291 IPR011009 -
Vium349g00033 1658 SUPERFAMILY BEACH domain 326 578 IPR036372 -
Vium349g00033 1658 SUPERFAMILY WD40 repeat-like 1298 1656 IPR036322 GO:0005515
Vium349g00033 1658 Pfam Beige/BEACH domain 347 560 IPR000409 -
Vium349g00033 1658 Gene3D BEACH domain 338 586 IPR036372 -
Vium349g00033 1658 ProSiteProfiles Trp-Asp (WD) repeats profile. 1529 1562 IPR001680 GO:0005515
Vium349g00033 1658 SMART Beach_2 346 578 IPR000409 -
Vium349g00033 1658 Gene3D Transferase(Phosphotransferase) domain 1 198 295 - -
Vium349g00033 1658 Gene3D Transferase(Phosphotransferase) domain 1 698 798 - -
Vium349g00033 1658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1529 1562 - -
Vium349g00033 1658 ProSitePatterns Trp-Asp (WD) repeats signature. 1547 1561 IPR019775 -
Vium349g00033 1658 CDD Beach 347 578 IPR000409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00033 Vium-Chr349 303942 313292 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Vium349g00033 Beach 9.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00033 K17601 - gmx:100809116 3017.25