Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00027 ATGCAGCTTCTTCACTCCGACGAACCCGCGTCCGAGCGGCGCGAGTCGCCGGAGAAGCCCGAGGATTCTAGCACTTTCTCCGATTCTCTGGACTCCGTAACCGACGACAGCGCGGCTCTCGACGTCACCGGGAAGAGCGTGGAGTTTCCGGAGGCGGAGAACGCCGAGGACTCGGCGGAGAGCCTTTACGTGTACAAGAACATTTACAGTCTTATTCCGAAGTCGGTTTCGCGCCTAGCACAATTGCGAACGCTTAAATTCTTCGGAAATGAGATTAACCTGTTCGCGCCCGAGGTTGGGAACTTGACGGCGTTGGAGTGCTTGCAGATGAAGATTTCCTCGCCGGGGATCGGAGGCTTGCCGTTGCACTCGCTCCAGGGTTTGAAGGAACTCGAACTCTCCAAAGGACCTCCCAGAACGTCTGCTTTTCCGATTTTGACAGAGATTTCTGGTCTCCAGTGTTTGACTAAGCTTTCCATTTGTCATTTTTCCATAAGATACCTTCCTCCGGAAATTGGATGCTTGAAAAAACTGGAGTATCTTGATCTTTCGTTTAATAAAATGAAGACGTTGCCAGTGGAGATTAGTTACTTGAGTGGCTTGATATCCATGAAAGTCGCGAATAATAAATTGATGGAGCTGCCGTCAGCTATATCTTCTCTGTCAAGACTGGAGAGTTTGGACCTGTCGAATAATAAGTTGACTTCGTTAGGGTCCCTTGAACTTGCCTCCATGCATAGACTTAAGAAGTTAAATCTTCAGTACAACAAGCTTCTCAGGACTTTTCAAGTTCCTTCATGGATATGTTGTAATATGGAGGGAAATGATGAAGCTAGATGCAAAGATGATTGTAGCAGCTCTTCTGTTGAAATGGATCTCAATGAAAGCAACTTTCAGGAAAATGACGAAACCCTTTCTGAGGGTTGTCAGCATATCTCATCAACCATGCTAACAAGCTCCTCATCTAGTAGTAGATGTTTTGTATCCCGGAAGTCAGGTAAGCGGTGGAAAAGACGGTATTATTTACAGCAGAAAGCTCGTCAAGAGCGCTTGAACAATAGTAGGAAGTGGAAAGCTGTAGATCATGACCAGTTGTTGAGCAAGAAGATTCACAAAATTTCTGAACCAGGAAATTGTGATAGTCTTGATTCTGAAACTCGTTCAGAAATTGTATCAGAGAATGGGAACCTGGATAATAGTAAAAGAATATTTTCTGAACACGCAATAAATGACAATGAAGTTGATAATGTTAACAATGATGAAGTAATTATTGAGAAGCGTTTTTCTGGGGAAGATTGCTGCACTACTGAAAGCAAAGATGAAAAGGATGCATGCTTGTGCTCCATAGAGAACAAGCAAAGTGAACAGGATGAAGTATCTTGTTTTGAACTTTTAGAGTGTGTCTCTAAATCAAAGAGACATTTAGACCGTGATCTTGATAATCCTAAACCGTGCAAGTCTAGAAAATCTATTAGTACTTGTTCATCATTGTCTAACAGGTACAGCAAAATCTCATTTTGTGGCATTGAAGACCATCTATCAGATGGATTTTATGATGCAGGACGAGATCGGCCATTTTTTCCTCTAGAGAGATATGAGCAAAATCAGTGTCTTGCTTCTCGTGAAGTCATCCTTTTAGACAGAAAAAGAGATGAAGAATTGGATGCTGTTTTTCTAGCTGCGCAGGCATTGGTCCATAATTTGAATCAGTTAAATGGTTTAAACAGACATGGGAACCAGGATGTGGTTGATAACTTGCAGAGAGCATCACTGCTTGCACTCTTTGTATCAGATCATTTTGGTGGCAGTGATAGAGGTGCTATCATAGAACAGACACGGAAATCTGTGTCTGGTTCAAACTATAATAAACCTTTTATCTGTACATGCTCGGTTGGAAGCAGCACCAGTATAAGGGCTTCCACCGAACCAGTTGTAAACACCACAGAAGATATTACTCTTTCTAAGATATGTGAGAAATCTCTGGACAATATTAAAAAAAGGCGAAATTCAATCATAGTTCCAATTGGCTCTGTGCAGTATGGTGTATGCAGACACAGAGCTCTGCTTTTCAAGTATTTATGTGATCACATGGAGCCACCAATTCCTTGTGAGCTTGTCAGGGGTTACCTAGATTTTTCACCACATGCCTGGAATATTGTTATGATTAAGAGGGGTGCCAAGTGGGTTCGAATGCTGATTGATGCTTGTCGACCTCTTGATATAAGAGAAGAGAAAGATACTGAATACTTTTGCAGGTATATACCTCTTAATCGAACCACGATCCCTCTTTCTTCTAGAGGAATTCCAGATTCTGCTTATTCTGTTCCATCACTTACTGCATGTGATGAGCTTGAGACAAAAGCTTCAACTACTTTAATTAAATGCAAAATTGGATCAGTTGAGGCTGCAGCAAAGGTGCGTACTTTGGCAGATCAGGGGAGTTCGGCTGACAAAATTAAAAACTTTGAGTATAATTGTCTGGGAGAAATAAGAATTCTTGGTGCTTTAAAACACCCCTGCATAGTGGAAATGTATGGACACAAAATGTCATGTCAATGGTCTGTCTCAGCCGATGGTAATCCTGAACACCGTGTGTTAAGATCTGCCATTTTTATGGAGTATGTGGAAGGGGGCTCTTTAAAAAACTATCTGGAGAAGCTGTCAGAAACTGGAAAAACATATGTTCCTGTGGAGTTGGCTTTGCATGTTGCTAAAGATGTCTCATGTGCTTTGTCAGAGCTGCACTCGAGGCACATAATTCATCGTGACATAAAAAGTGAAAATATTCTGCTTGATTTGGATAGGAAGAGAGACAATGGAGCTCCCACTGTAAAGCTCTGTGATTTTGATAGTGCAGTGCCACTAAGATCAACTTTACATGCATGTTGTATTGCTCATGTGGGAACACCTCCTCCCTGTGTATGTGTTGGAACACCTAGGTGGATGGCTCCAGAGGTTATGCAGACTATGTACGAAAAAAAATCTTATGGATTGGAAGCGGACATTTGGTCGTTTGGATGTTTACTTCTGGAGATGCTTACTTTGCAAATTCCATATTCTGGGCTTTCTGATTCACACTTCCTTGATAGTCTGCAGATGGGTAAACGACCACAGTTAACTGATGAGCTGGAGGCATTGAGTTCAGTGGACGAACCCTCAATGATTCCATCGGGTGAAGAGATAGAAAAATCAGATCTTGAGGTTGACATGTTGAAATTCCTTGTTGATTTGTTTCACAAGTGCGTAGAAGAAAATCCTAACAAGCGTCCTACAGCTGAAGAAATCCATAAAATGCTGCTTGCACACACACACAAAGATCGTTTACAAGTTTAA 3333 0.4197 MQLLHSDEPASERRESPEKPEDSSTFSDSLDSVTDDSAALDVTGKSVEFPEAENAEDSAESLYVYKNIYSLIPKSVSRLAQLRTLKFFGNEINLFAPEVGNLTALECLQMKISSPGIGGLPLHSLQGLKELELSKGPPRTSAFPILTEISGLQCLTKLSICHFSIRYLPPEIGCLKKLEYLDLSFNKMKTLPVEISYLSGLISMKVANNKLMELPSAISSLSRLESLDLSNNKLTSLGSLELASMHRLKKLNLQYNKLLRTFQVPSWICCNMEGNDEARCKDDCSSSSVEMDLNESNFQENDETLSEGCQHISSTMLTSSSSSSRCFVSRKSGKRWKRRYYLQQKARQERLNNSRKWKAVDHDQLLSKKIHKISEPGNCDSLDSETRSEIVSENGNLDNSKRIFSEHAINDNEVDNVNNDEVIIEKRFSGEDCCTTESKDEKDACLCSIENKQSEQDEVSCFELLECVSKSKRHLDRDLDNPKPCKSRKSISTCSSLSNRYSKISFCGIEDHLSDGFYDAGRDRPFFPLERYEQNQCLASREVILLDRKRDEELDAVFLAAQALVHNLNQLNGLNRHGNQDVVDNLQRASLLALFVSDHFGGSDRGAIIEQTRKSVSGSNYNKPFICTCSVGSSTSIRASTEPVVNTTEDITLSKICEKSLDNIKKRRNSIIVPIGSVQYGVCRHRALLFKYLCDHMEPPIPCELVRGYLDFSPHAWNIVMIKRGAKWVRMLIDACRPLDIREEKDTEYFCRYIPLNRTTIPLSSRGIPDSAYSVPSLTACDELETKASTTLIKCKIGSVEAAAKVRTLADQGSSADKIKNFEYNCLGEIRILGALKHPCIVEMYGHKMSCQWSVSADGNPEHRVLRSAIFMEYVEGGSLKNYLEKLSETGKTYVPVELALHVAKDVSCALSELHSRHIIHRDIKSENILLDLDRKRDNGAPTVKLCDFDSAVPLRSTLHACCIAHVGTPPPCVCVGTPRWMAPEVMQTMYEKKSYGLEADIWSFGCLLLEMLTLQIPYSGLSDSHFLDSLQMGKRPQLTDELEALSSVDEPSMIPSGEEIEKSDLEVDMLKFLVDLFHKCVEENPNKRPTAEEIHKMLLAHTHKDRLQV 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00027 1110 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Vium349g00027 1110 FunFam Leucine-rich repeat protein kinase family protein 48 290 - -
Vium349g00027 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
Vium349g00027 1110 Pfam Leucine rich repeat 203 258 IPR001611 GO:0005515
Vium349g00027 1110 SMART serkin_6 782 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium349g00027 1110 SUPERFAMILY RNI-like 62 260 - -
Vium349g00027 1110 SMART LRR_typ_2 245 271 IPR003591 -
Vium349g00027 1110 SMART LRR_typ_2 221 244 IPR003591 -
Vium349g00027 1110 SMART LRR_typ_2 79 102 IPR003591 -
Vium349g00027 1110 SMART LRR_typ_2 175 198 IPR003591 -
Vium349g00027 1110 SMART LRR_bac_2 221 240 - -
Vium349g00027 1110 SMART LRR_bac_2 175 194 - -
Vium349g00027 1110 SMART LRR_bac_2 198 217 - -
Vium349g00027 1110 Gene3D Transferase(Phosphotransferase) domain 1 782 1109 - -
Vium349g00027 1110 PRINTS Leucine-rich repeat signature 221 234 - -
Vium349g00027 1110 PRINTS Leucine-rich repeat signature 178 191 - -
Vium349g00027 1110 SMART LRR_sd22_2 221 242 - -
Vium349g00027 1110 SMART LRR_sd22_2 175 200 - -
Vium349g00027 1110 SUPERFAMILY Protein kinase-like (PK-like) 794 1100 IPR011009 -
Vium349g00027 1110 FunFam Leucine-rich repeat protein kinase family protein 824 1105 - -
Vium349g00027 1110 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Vium349g00027 1110 Gene3D Ribonuclease Inhibitor 43 289 IPR032675 -
Vium349g00027 1110 ProSiteProfiles Protein kinase domain profile. 786 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium349g00027 1110 Pfam Ethylene-responsive protein kinase Le-CTR1 652 725 - -
Vium349g00027 1110 Pfam Protein kinase domain 819 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium349g00027 1110 MobiDBLite consensus disorder prediction 1 45 - -
Vium349g00027 1110 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 105 1105 - -
Vium349g00027 1110 MobiDBLite consensus disorder prediction 1 25 - -
Vium349g00027 1110 SUPERFAMILY Cysteine proteinases 679 737 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00027 Vium-Chr349 271954 282177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00027 803 1095 MAP Kinase Kinase Kinase AT4G08500 32.653 6.74e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Vium349g00027 Pkinase 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00027 - - gmx:100819959 1891.7