Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00025 ATGCCAGTGAGGCAGATGAAAGAAAGCTCTGAGCAACACCTTGTGATCAAACCCCATCTGCAGAATCCCATGAATCCAGCCAAGAAGACAACCAAAGCTGCCCAAAATGGCAAAGGTCCACCGCCACTAGAAATCGATAGCCAAGCTTTGCCTCACTCAAAGAACAAGGGAAGAAGAAGGGGGAGAGGTGGCAGAAAACCCGATCAAGGAGATGTTATGATGAGGCCTAGAAGCAGACCATGCACTGCAACACTTACAAGTAGTGCAAATGGGAATGTTGAAAATGATTTCATCTCTGATATGGGTTTTCCCACTTCAAGCAAGTCTTTGAGCTTTGCTCGTAGGCCTGGATATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTTGCTATTACCCCAGAAGTGTCTTCTAAAACAGTGAACAGGTCTATCATAGCAGAACTAGTGAGGCTCTATAAAGAGTCTGACTTGGGGATGAGACTCCCAGCATATGATGGCAGAAAAAGTCTGTACACAGCAGGGCAGCTTCCCTTTGCTTGGAGAGAGTTTAAGATTAAGCTTGTAGATGAAGAGGAAGGAGTCAATGGCCCCAAAAGGGAAAGAGAGTACAGGGTGGTGATCAAATTTGTTGCTCGGGCAAACTTGCATCACTTGGGCCAGTTCCTAGCTGGTAAGCGTGCTGATGCACCCCAAGAGGCACTTCAAATCCTGGACATTGTACTAAGAGAGCTGGCAACTAAGAGGTATTGCCCAATTGGAAGGTCCTTCTTTTCACCTGATATTAGAACACCGCAACGGCTTGGAGAGGGATTAGAGTCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGACTCTCCCTCAATATTGATATGGCATCTGCTGCATTTATTGAGCCACTTCCAGTAGTGGAATTTGTTGGGCAGCTATTAGGGAAAGATGTGATGTCAAGGCCTTTGTCAGATGCTGATCGTATTAAGATTAAGAAAGCCCTTAGAGGAGTAAAAGTTGAAGTAACACATAGAGGGAGTGTGAGAAGAAAATATCGTGTTTCAGGGTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAACTCAACTATGAAATCAGTAGTTGAATACTTCCAAGAGATGTATGGCTTCACTATTCAATATACTCACCTTCCTTGCCTCCAAGTGGGAAACCAGAAGAAGGCCAACTATTTGCCTATGGAGGCTTGCAAAATTGTTGAGGGGCAACGCTATACAAAAAGATTGAACGAGAAGCAAATTACTGCTCTATTGAAAGTTACTTGCCAGAGACCTCGTGATCGTGAAAATGACATTTTACGGACCATTCAACATAATGCTTATGATCAAGATCCGTATGCAAAAGAATTTGGAATTAAAATCAGTGAAAAGCTGGCTTCAGTTGAAGCGAGAATTCTTCCAGCCCCTTGGCTTAAATATCACGAAAGTGGGAAGGAAAAGAACTGTTTACCCCAAGTTGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATAAATTTTTCAAGGAGTGTGCAAGATAGTGTTGCTCGCACTTTTTGTAACGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCGGAGCCTGTTATCCCCATATACAATGCCAAGCCTGAACAGGTAGAGAAAGCTTTGAAACATGTTTACCATGTTTCTGCGAGCAAAACTAAAGGAAAGGAATTGGAGCTATTGTTAGCAATATTGCCAGACAATAACGGTTCACTCTATGGTGATCTGAAGCGAATTTGTGAAACTGATCTTGGGCTAATTTCACAATGCTGTCTGACAAATCATGTCTTCAAAATCACTAAACAGTACTTAGCTAATGTGTCTCTGAAGATCAATGTGAAGATGGGCGGTAGAAATACTGTACTTCTTGATGCTGTGAGCTGCAGAATACCATTGGTCAGTGACATACCAACCATAATTTTCGGAGCAGATGTAACCCACCCTGAAAACGGCGAAGACTCAAGCCCTTCAATTGCAGCTGTAGTAGCATCTCAGGACTGGCCTGAAGTAACAAAATACGCTGGTCTAGTGTGCGCTCAAGCTCATCGGCAGGAACTCATACAAGACTTGTACAAAACTTGGCACGACCCTGTTCGTGGCACAGTTAGTGGAGGCATGATCCGAGATTTACTTGTTTCCTTCAGAAAGGCAACAGGACAAAAACCGCTACGAATTATATTTTACAGGGACGGTGTCAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTAGGAAGGCATGTGCTTCCTTAGAACCAAATTACCAGCCTCCAGTAACTTTCATAGTCGTGCAAAAAAGGCATCATACTCGGCTATTCGCAAACAACCACAGGGACAGAAGCAGCACTGATAGGAGTGGGAATATATTGCCTGGGACTGTTGTTGATTCCAAAATCTGCCATCCAACAGAGTTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGGCCAGCTCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTTTGTTATACATATGCAAGGTGTACACGCTCAGTATCTGTTGTTCCCCCAGCATATTATGCGCATTTAGCAGCCTTTCGAGCCCGTTTCTACATGGAACCAGATATGCAAGAGAATGGTTCTACAGGTGAGGGTAATGGTCATGGTTCCAAAGGAACACGAGCAGCTGGAGATTATAGTGTGAAGCCATTGCCAGACCTGAAAGAAAATGTGAAGAGAGTGATGTTTTACTGTTAG 2925 0.4328 MPVRQMKESSEQHLVIKPHLQNPMNPAKKTTKAAQNGKGPPPLEIDSQALPHSKNKGRRRGRGGRKPDQGDVMMRPRSRPCTATLTSSANGNVENDFISDMGFPTSSKSLSFARRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVAITPEVSSKTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLVDEEEGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELATKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVMSRPLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSASKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTNHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTGEGNGHGSKGTRAAGDYSVKPLPDLKENVKRVMFYC 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00025 974 CDD Piwi_ago-like 478 928 IPR045246 -
Vium349g00025 974 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 104 930 - -
Vium349g00025 974 FunFam Argonaute 10 498 671 - -
Vium349g00025 974 Gene3D - 498 671 - -
Vium349g00025 974 FunFam protein argonaute 10-like 677 974 - -
Vium349g00025 974 Gene3D paz domain 313 438 - -
Vium349g00025 974 Pfam N-terminal domain of argonaute 124 258 IPR032474 -
Vium349g00025 974 ProSiteProfiles PAZ domain profile. 320 434 IPR003100 GO:0005515
Vium349g00025 974 SUPERFAMILY PAZ domain 314 474 IPR036085 GO:0005515
Vium349g00025 974 SMART Piwi_a_2 608 929 IPR003165 GO:0003676
Vium349g00025 974 Pfam Argonaute linker 2 domain 460 506 IPR032472 -
Vium349g00025 974 Pfam Argonaute linker 1 domain 268 317 IPR014811 -
Vium349g00025 974 Pfam Piwi domain 609 928 IPR003165 GO:0003676
Vium349g00025 974 SMART DUF1785_2 267 319 IPR014811 -
Vium349g00025 974 CDD PAZ_argonaute_like 319 433 - -
Vium349g00025 974 Pfam Mid domain of argonaute 517 594 IPR032473 -
Vium349g00025 974 ProSiteProfiles Piwi domain profile. 608 929 IPR003165 GO:0003676
Vium349g00025 974 MobiDBLite consensus disorder prediction 1 90 - -
Vium349g00025 974 SUPERFAMILY Ribonuclease H-like 600 930 IPR012337 -
Vium349g00025 974 MobiDBLite consensus disorder prediction 933 957 - -
Vium349g00025 974 Gene3D - 677 974 IPR036397 GO:0003676
Vium349g00025 974 Pfam PAZ domain 346 450 IPR003100 GO:0005515
Vium349g00025 974 FunFam Protein argonaute-2 313 439 - -
Vium349g00025 974 SMART PAZ_2_a_3 324 456 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00025 Vium-Chr349 249276 257809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00025 1 974 Eukaryotic Initiation Factors Gene Family AT5G43810 81.300 0.0 1662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00025 K11593 - gmx:100816999 1904.41