Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00021 ATGGAAGATAATGGCCTGGCGCCGTTGTTCAATGTTGGCCCCCACAAGTTGAAGCTTCTCATGTCTCTTCTTCTGCTCATGCTCTTCCTTCTCTTTCCATTTGCTTTGCCCCTCAGCGAAGAAGGACAAGCATTAATGGCGATGAAGGCCACTTTCAGCAATATGGCAGACGTGCTTCTTGACTGGGATGACGTCCACAATGACGATTTTTGCTCTTGGCGTGGAGTTTCCTGCGATAATGGCAGCCTTGCTGTGATTTCTCTGAACTTGTCCAGCTTGAACCTCGGCGGGGAGATATCCCCAGCCATTGGTGACTTGAGAAGCTTGCAGTCCATAGACTTGCAAGGGAATAAATTAACGGGGCAAATCCCAGATGAAATTGGAAACTGTGCAGCACTTTTTCTTTTGGATTTGTCTGATAATCACCTTTATGGTGATATACCTTTCTCCCTGTCAAAGCTAAAGCAACTTGAGTTTTTGAATTTAAAGAGTAATCAGTTAACTGGTCCTATCCCTTCAACCCTAACCCAAATTCCAAATCTTAAGACTCTTGATCTTGCTCGAAATAGGCTCACTGGAGAGATCCCAAGATTACTCTATTGGAACGAAGTCTTGCAGTACCTTGGATTACGAGGGAACATGTTGAGTGGTACTCTGTCTCCTGATATATGTCAATTAACTGGATTGTCGTATTTTGATGTGAGAGACAACAATTTGACTGGTACTATACCTGACAGCATAGGGAACTGTTCAAGTTTTGAAATCTTAGACATATCATATAATCAGATTAGTGGAGAGATTCCATATAATATTGGGTTTCTGCAAGTTGCTACGTTGTCACTTCAAGGAAATAGATTAACTGGGAAGATTCCGGAAGTGATTGGTTTGATGCAAGCCCTTGTAATATTGGATTTGAGTGAGAATGAGTTAGTGGGATCAATTCCCCCAATACTTGGGAATCTGACTTTCACTGGAAAGCTGTACCTTCATGGAAACATGCTTACTGGCCCGATACCTCCTGAACTAGGCAATATGTCCAACCTGAGCTACTTGATATTGAATGACAACCACCTAGTTGGAAAAATTCCAAATGAGTTTGGGAAGCTAGAACATCTTTTTGAATTGAATCTTGCCAATAATCATCTTGATGGAACTATTCCACATGACATAAGCTCCTGCACAGCCTTAAATCAGTTTAATGTGCATGGTAATCAATTGAGTGGTTCCATTCCATTGAGCTTCCGCAACCTTGGTAGTTTGACATACTTAAACCTCTCTGCGAACAACTTCAAGGGGACCATACCTGTCGAGTTGGGGCATATTATTAATCTAGATACATTGGATCTATCTTGCAATAACTTTTCAGGACTTGTTCCAGCCTCTGTTGGTTATCTGGAACATCTCTTGACCCTCAACTTAAGTCACAACCACCTTGGAGGTTCTTTGCCAGCTGAATTTGGGAATCTCAGAAGCATTCAAATTCTTGACATGTCATTCAACAATCTCTCTGGTAGCATTCCTCCGGAAATTGGACAGCTGCAGAACCTTATGTCTTTGATTATGAACAAAAATGATCTGCAAGGGAAGATTCCTGATCAGCTGACTAATTGTTTCAGTCTTACACTATTAAATTTGTCCTATAACAACCTTTCCGGAGTAATTCCTTCAATGAAGAACTTTTCAAGGTTTTCAGCTGACAGCTTCTTAGGAAATTCATTATTGTGTGGAGATTGGGTGGGATCAATATGTCGTCCTTACATTCCAAAATCAAGAGTGATTTTCTCCAGAGTTGCTGTAGTATGTCTCACGCTTGGAATTATGATATTGTTAGCTATGGTCATTGTAGCCTTCTATAGATCCAGCCAATCTAAACAATTGATGAAGGGATCTAGCAGAACTGGGCAAGGTCCTCCAAGACTAGTTGTTCTGCACATGGATATGGCTATCCACACCTTGGATGATATAATGAGAAGCACTGAGAATCTCAATGAGAAATATATCATAGGTTATGGTGCCTCTAGTACTGTATACAAATGTGTTTTGAAGAATTCCCGACCAATTGCAATTAAGCGACTGTATAACCAACACCCACACAATTTAAGGGAGTTTGAGACCGAACTTGAGACAGTTGGTAGCATCAGACATAGAAACCTTGTCACCTTGCATGGATATGCACTCACTCCCGATGGAAATCTTCTTTTCTATGACTATATGGCGAATGGGTCATTGTGGGATCTTCTACACGGTCCCTCGAAGGTAAAACTTGATTGGGAAACACGCCTGAGGATTGCTGTTGGAGCAGCCGAAGGACTAGCTTATCTCCATCATGACTGTAACCCGCGAATAGTTCACAGGGACATTAAATCTTCGAATATTTTGCTGGATGAGAACTTTGAGGCTCATCTCTCTGATTTTGGTACTGCAAAGTGCATCTCGACTTCGAGAACTCATGCATCGACCTATGTCCTTGGAACTATTGGCTATATTGACCCTGAGTATGCCCGAACATCTAGGCTGAATGAAAAATCAGATGTGTATAGCTTTGGAATAGTTCTTTTGGAGCTACTAACTGGAAAGAAGGCAGTGGACAATGAGTCTAATTTGCATCAATTGATATTGGCCAAGGCAGATAACAACACTGTAATGGAGGCTGTTGATGCAGAGGTGTCCATAACCTGCATTGATCTAGCTCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACGAAAAAGAACCCTTCTGATAGGCCTACCATGCATGAAGTAGCCAGGGTTCTGGTATCACTGCTTCCTTCACCTCCAAGTAAGATCCTTGCTCCACCTGCGAAGAAATTTGACTATGCCCATTTTGTGATCGAGAAGGGACAACCTCGAAAAGTGGAAGCACAACCTCAACAAGAAGATAACAACTCAACCAATGCTCAATGGTTTGTTCGCTTTGGGGATGTTATATCCCAGAGTACTTGA 2970 0.4185 MEDNGLAPLFNVGPHKLKLLMSLLLLMLFLLFPFALPLSEEGQALMAMKATFSNMADVLLDWDDVHNDDFCSWRGVSCDNGSLAVISLNLSSLNLGGEISPAIGDLRSLQSIDLQGNKLTGQIPDEIGNCAALFLLDLSDNHLYGDIPFSLSKLKQLEFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNMLSGTLSPDICQLTGLSYFDVRDNNLTGTIPDSIGNCSSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALVILDLSENELVGSIPPILGNLTFTGKLYLHGNMLTGPIPPELGNMSNLSYLILNDNHLVGKIPNEFGKLEHLFELNLANNHLDGTIPHDISSCTALNQFNVHGNQLSGSIPLSFRNLGSLTYLNLSANNFKGTIPVELGHIINLDTLDLSCNNFSGLVPASVGYLEHLLTLNLSHNHLGGSLPAEFGNLRSIQILDMSFNNLSGSIPPEIGQLQNLMSLIMNKNDLQGKIPDQLTNCFSLTLLNLSYNNLSGVIPSMKNFSRFSADSFLGNSLLCGDWVGSICRPYIPKSRVIFSRVAVVCLTLGIMILLAMVIVAFYRSSQSKQLMKGSSRTGQGPPRLVVLHMDMAIHTLDDIMRSTENLNEKYIIGYGASSTVYKCVLKNSRPIAIKRLYNQHPHNLREFETELETVGSIRHRNLVTLHGYALTPDGNLLFYDYMANGSLWDLLHGPSKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCISTSRTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILAKADNNTVMEAVDAEVSITCIDLAHVKKTFQLALLCTKKNPSDRPTMHEVARVLVSLLPSPPSKILAPPAKKFDYAHFVIEKGQPRKVEAQPQQEDNNSTNAQWFVRFGDVISQST 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00021 989 Pfam Protein kinase domain 664 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium349g00021 989 Gene3D Transferase(Phosphotransferase) domain 1 738 935 - -
Vium349g00021 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 38 202 - -
Vium349g00021 989 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
Vium349g00021 989 Pfam Leucine rich repeat 443 502 IPR001611 GO:0005515
Vium349g00021 989 SUPERFAMILY Protein kinase-like (PK-like) 640 927 IPR011009 -
Vium349g00021 989 Gene3D Ribonuclease Inhibitor 318 585 IPR032675 -
Vium349g00021 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 203 312 - -
Vium349g00021 989 SUPERFAMILY L domain-like 40 332 - -
Vium349g00021 989 SMART LRR_typ_2 489 513 IPR003591 -
Vium349g00021 989 SMART LRR_typ_2 345 368 IPR003591 -
Vium349g00021 989 SMART LRR_typ_2 417 441 IPR003591 -
Vium349g00021 989 SMART LRR_typ_2 465 488 IPR003591 -
Vium349g00021 989 SMART LRR_typ_2 297 321 IPR003591 -
Vium349g00021 989 SMART LRR_typ_2 154 177 IPR003591 -
Vium349g00021 989 SMART LRR_typ_2 369 393 IPR003591 -
Vium349g00021 989 SMART LRR_typ_2 106 130 IPR003591 -
Vium349g00021 989 SMART LRR_typ_2 226 250 IPR003591 -
Vium349g00021 989 SMART LRR_typ_2 178 202 IPR003591 -
Vium349g00021 989 Pfam Leucine Rich repeat 179 194 IPR001611 GO:0005515
Vium349g00021 989 Pfam Leucine Rich repeat 250 266 IPR001611 GO:0005515
Vium349g00021 989 ProSiteProfiles Leucine-rich repeat profile. 180 202 IPR001611 GO:0005515
Vium349g00021 989 PANTHER LEUCINE RICH REPEAT KINASE 2 277 931 - -
Vium349g00021 989 ProSiteProfiles Protein kinase domain profile. 662 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium349g00021 989 Gene3D Ribonuclease Inhibitor 38 201 IPR032675 -
Vium349g00021 989 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 738 937 - -
Vium349g00021 989 Gene3D Ribonuclease Inhibitor 202 316 IPR032675 -
Vium349g00021 989 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 633 737 - -
Vium349g00021 989 SUPERFAMILY L domain-like 320 576 - -
Vium349g00021 989 SMART serkin_6 662 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium349g00021 989 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
Vium349g00021 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 313 586 - -
Vium349g00021 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Vium349g00021 989 Gene3D Phosphorylase Kinase; domain 1 628 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00021 Vium-Chr349 201012 208718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00021 108 989 Receptor kinase-like Gene Family AT5G07180 76.217 0.0 1352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vium349g00021 Pkinase 3.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00021 K20718 - gmx:100811653 1734.54