Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00017 ATGCCTTCAGTCTCTCTCTCTGCCACTGACACCACCCTCCAAGAAACCAAGAAGCTTAGCGCCAAGAAAGCCAAGAACCAATCCCCAACCATTGCAGAGAAGAAGAGTGCCTCCAAACTTCTTTCTGATCCAAACACCCCCGATCCCGACCAAGATGGGGTTTCGGGGAAGCTCCAGAAGAAGGCGAAGAAGCGTAAGGCTTCAGACATAGAGGCTATGGCGGCGACCAACGATGCCGACGAAGACACTAGTTCCGAGCTGGTGGAGCCCGAATCTTCTAGAGAAGACGACCACAAGAAGAAGAAAAAGAAGAAAAAGGTCAAGTCCGAGGAACAGCCTTTGGTGATGGAAGCAGAGGAAAAAGAAGAGAAGAAGGAGGATCCTAATGCGGTCTCCAAATTCAGGATATCTGAACCGTTGAGGCTAAAATTGAAGGAGAAGGGGATCGAATCCTTGTTTCCTATTCAGGCCATGACTTTCGATTTAGTTCTCGACGGTTCTGATTTGGTTGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCATTTGTGCTACCCATATTGGAGTCTTTAATAAATGGTCCGACTAAGTCTTCTAGAAAGACGGGCTACGGGAGAACTCCAAGCGTTCTTGTGCTTCTACCAACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGAGCGATGGGATTGAGTTCTTGTTGTTTGTATGGTGGAGCTCCATATAACACTCAAGAAATTAAGCTTAGGAGAGGTGTTGATATTGTAATTGGCACACCAGGTCGTGTAAAGGATCATATCGAGAGGGGAAATATAGACCTGAGCCAACTGAAATTTCGTGTCCTTGATGAAGCAGATGAAATGCTAAGGATGGGTTTTGTTGAAGATGTTGAGTTGATTCTAGGTAAGGTTGAAAATGTTAATAAAGTTCAGACTCTTCTCTTCAGCGCTACTTTACCAGACTGGGTTAAACATATTGCTGCACAATTTCTGAAGCCTGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACCAATGTGAGGCATATTGTTCTCCCTTGTTCTGCTCCTGCCAGGTCCCAACTTATCCCGGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTCAGCTTGCAGGGTTGTTACCTGGAGCCAGAGCTCTCCATGGTGACATACAACAAGCACAACGTGAGGTTACTCTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTTGATATAAATGATGTTCAGTTAATTATCCAGTGTGAGTTCCCACGGGAGGTAGAGTCCTATATCCATCGTTCTGGACGAACAGGAAGAGCAGGTAATACTGGGGTTGCTGTTACCCTTTATGATCCAAAAAGATCTAATATATCTAAAATAGAAAGAGAGTCCGGTGTAAAATTTGAGCACATATCTGCCCCTCGGCCTGATGATATTGCTAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTTTCCGATAGTGTGATTCCTGCGTTCAAAGAAACCGCTGAAGAGCTATTGAAGAGTTCTGGTTTAACAGTAGTGGAATTGCTTGCAAAGGCTCTTGCAAAGGCTGTTGGTTATACCGAAATAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTATGTTACATTGCTTCTTGAAATTGGGAAACCAATCTTCACTCCTTCTTTTGCCTATGGAATCTTGAGGAGATTTTTGCCTGAAGAGAAGGTGGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGCTGTTTTTGATGTTCCAGCTGAAGATTTAAATACATATCTTAGTGGCCAGGAAAATGCTGCTAATGTAAGTCTAGAGGTATTGAAAGCTTTGCCACGTTTGCAACAGAGAGAACAATCGAGAGGTGGCAGATTTGGTGACGGTGGTGGTCGAGGTGGTGGGAACAGGTTTGGAAGAGGCGGGGGAGGCAGGAACGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGAAGAGGTGGTCGTGGAAACTGGGGTGGAAAGAGATGGTGA 2142 0.4505 MPSVSLSATDTTLQETKKLSAKKAKNQSPTIAEKKSASKLLSDPNTPDPDQDGVSGKLQKKAKKRKASDIEAMAATNDADEDTSSELVEPESSREDDHKKKKKKKKVKSEEQPLVMEAEEKEEKKEDPNAVSKFRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKSSRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCLYGGAPYNTQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSAPARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAVTLYDPKRSNISKIERESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKETAEELLKSSGLTVVELLAKALAKAVGYTEIKQRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLSLTADGNGAVFDVPAEDLNTYLSGQENAANVSLEVLKALPRLQQREQSRGGRFGDGGGRGGGNRFGRGGGGRNGRFSNDRFSNGGGRGGRGNWGGKRW 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00017 713 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 89 543 - -
Vium349g00017 713 CDD DEADc 144 337 - -
Vium349g00017 713 MobiDBLite consensus disorder prediction 1 15 - -
Vium349g00017 713 MobiDBLite consensus disorder prediction 108 126 - -
Vium349g00017 713 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 513 IPR001650 -
Vium349g00017 713 SMART ultradead3 148 360 IPR014001 -
Vium349g00017 713 MobiDBLite consensus disorder prediction 54 71 - -
Vium349g00017 713 FunFam DEAD-box ATP-dependent RNA helicase 7 580 652 - -
Vium349g00017 713 Gene3D - 74 342 IPR027417 -
Vium349g00017 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 486 IPR027417 -
Vium349g00017 713 SUPERFAMILY RNA-binding domain, RBD 567 650 IPR035979 GO:0003676
Vium349g00017 713 Pfam GUCT (NUC152) domain 563 658 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vium349g00017 713 MobiDBLite consensus disorder prediction 661 713 - -
Vium349g00017 713 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 342 IPR014001 -
Vium349g00017 713 SMART helicmild6 397 474 IPR001650 -
Vium349g00017 713 MobiDBLite consensus disorder prediction 23 49 - -
Vium349g00017 713 Pfam DEAD/DEAH box helicase 153 330 IPR011545 GO:0003676|GO:0005524
Vium349g00017 713 Pfam Helicase conserved C-terminal domain 376 474 IPR001650 -
Vium349g00017 713 CDD SF2_C_DEAD 357 483 - -
Vium349g00017 713 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 286 294 IPR000629 -
Vium349g00017 713 CDD GUCT_RH7_like 570 655 - -
Vium349g00017 713 Gene3D - 581 652 - -
Vium349g00017 713 MobiDBLite consensus disorder prediction 1 126 - -
Vium349g00017 713 Gene3D - 359 580 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00017 Vium-Chr349 148689 153484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00017 166 510 Eukaryotic Initiation Factors Gene Family AT1G72730 30.000 9.67e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00017 K16911 - gmx:100820207 1023.46