Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00012 ATGGGTCTCATTCTAACAATCCATCTCCTCTTGTGTATACTATCGTCTGCAAATGCTGAATTTTCCAAGAACACGTACATCATTCAAATGGATAAGTCAGCAAAGCCTGAGACCTTCTCCAATCACCTTGAATGGTATACCTCAAAAGTGAAATCAATTCTGTCCAACTCGGTAGAAGCTGAGATGGACAAGGAGGAGAGAATCATTTACACCTACCAAACTGCTTTTCATGGACTGGCTGCCAAGTTGAGCCAAGAAGAAGCTGAGAAGCTAGAGGCAGAAGAAGGGGTTGTGGCCATGTTCCCGGATACTAAGTATCAACTTCACACCACGAGAAGTCCAACTTTCCTTGGGCTTGAACCAACACAAAGCACTAACGTGTGGTCAGAAAAGTTGGCCAACCATGATGTCACAGTGGGAGTGCTCGACACTGGGATTTGGCCTGAGAGTGAGAGCTTCAATGACACAGGCATGAGATCAGTTCCTTCTCACTGGAAAGGTGCCTGTGAGACCGGTAGAGGCTTCGAAAAATATCACTGCAACAAGAAGATCGTGGGGGCAAGAATGTTTTACCATGGGTATGAAGCGGCAACAGGTAAAATTGATGAGAAAACAGAATACAAATCGCCAAGAGATCAAGATGGTCACGGAACTCACACTGCAGCTACAGTTGCTGGCTCCCTGGTGCATGATGCTAATCTTCTAGGCTATGCTCATGGCACAGCAAGAGGAATGGCACCAAGAGCGAGAATTGCTGCTTACAAAGTATGCTGGACTGGTGGATGCTTCAGCTCAGATATTCTTTCAGCTGTTGATACAGCTGTGGCTGATGGAGTCGATGTTCTATCCATCTCTTTGGGTGGTGGAGTCTCCTCTTACTACCGTGATAGTTTATCTGTAGCTGCTTTTGGAGCAATGGAGAAAGGTGTTTTGGTATCGTGTTCTGCTGGAAATGCAGGACCTGACCCTGTTAGCCTCACAAATGTGTCACCTTGGATCACCACAGTTGGAGCCAGCACCATGGATAGAGATTTTCCAGCAGATGTTAGTCTTGGAAATGGAAGAAAGATAACGGGAACCTCGCTCTATAAAGGGAGAAGCGTGCTCTCAGTTAAGAAACAGTACCCTTTAGTATACATGGGAAATATCAACTCAAGCATACCTGATCCAAGATCTTTGTGCTTGGAAGGTACTCTGGATCGTAGAATGGTTTCAGGCAAGATTGTTATCTGTGACAGAGGCATTAGTCCAAGAGTTCAGAAGGGTCAAGTGGTGAAAAATGCAGGCGGGGTGGGAATGATTCTCACCAACACTGCAGCTAATGGAGAGGAGCTTGTTGCAGACTGTCATCTCCTTCCAGCAGTTGCAATTGGAGAGAAAGAAGGCAAGGAGCTAAAACGTTATGTGTTAACAAGTAAAAAAGCTACTGCAACTCTAGCTTTTCTGGCTACAAGGTTGGGTGTTAGACCATCTCCTGTAGTGGCAGCATTTTCATCAAGAGGGCCCAATTTTCTTACCCTTGAAATTTTGAAGCCTGATGTGGTGGCTCCAGGGGTGAACATTATTGCTGCTTGGAGTGGAGCCATTGGTCCTTCAAGTTTGCCAACAGACCACAGGAGGGTGAAGTTCAATATACTCTCAGGAACTTCAATGTCATGCCCTCATGTGAGTGGCATTGCTGCTTTGCTCAAGGCTAGGCATCCAGAATGGAGTCCTGCTGCTATAAAATCTGCTTTGATGACCACAGCTTATGTCCATGACAATACCATCAAGCCTCTCAAGGATGCCTCGAGTGCTGATGCCTCAACTCCTTATGATCATGGTGCTGGACACATCAACCCCGGAAGAGCTCTTGACCCAGGTTTGGTTTATGATATTCAGCCACAGGATTACTTTGAATTCCTGTGCACCCAGAAACTGACTCCATCTGAACTCGGAGTTTTTGCCAAGTATTCAAACAGAACTTGCAGTCACTCTCTTGCAAGTCCTGGGGACTTGAACTACCCAGCCATATCCGTAGTTTTTCCACAGATTAATTCCTCTTCAGTTTTGACCGTTCACAGAACTGCCACCAATGTTGGCCCTGCTGTCTCCAAGTACCATGTTGTGGTTTCACATTTCAAAGGCGCTTCTGTTAAAGTTGAGCCAAACACCTTGAGTTTTACCAAAAAATACCAGAAACTATCTTACAAAGTTACATTCACAACACAATCTCCACAAACAGAACCTGAATTTGGAGGTCTGGTATGGAAGGATGGTGTGCACAAAGTAAGAAGTCCAATTGTCATAACATATTTGTCACCAATATGA 2310 0.4524 MGLILTIHLLLCILSSANAEFSKNTYIIQMDKSAKPETFSNHLEWYTSKVKSILSNSVEAEMDKEERIIYTYQTAFHGLAAKLSQEEAEKLEAEEGVVAMFPDTKYQLHTTRSPTFLGLEPTQSTNVWSEKLANHDVTVGVLDTGIWPESESFNDTGMRSVPSHWKGACETGRGFEKYHCNKKIVGARMFYHGYEAATGKIDEKTEYKSPRDQDGHGTHTAATVAGSLVHDANLLGYAHGTARGMAPRARIAAYKVCWTGGCFSSDILSAVDTAVADGVDVLSISLGGGVSSYYRDSLSVAAFGAMEKGVLVSCSAGNAGPDPVSLTNVSPWITTVGASTMDRDFPADVSLGNGRKITGTSLYKGRSVLSVKKQYPLVYMGNINSSIPDPRSLCLEGTLDRRMVSGKIVICDRGISPRVQKGQVVKNAGGVGMILTNTAANGEELVADCHLLPAVAIGEKEGKELKRYVLTSKKATATLAFLATRLGVRPSPVVAAFSSRGPNFLTLEILKPDVVAPGVNIIAAWSGAIGPSSLPTDHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAYVHDNTIKPLKDASSADASTPYDHGAGHINPGRALDPGLVYDIQPQDYFEFLCTQKLTPSELGVFAKYSNRTCSHSLASPGDLNYPAISVVFPQINSSSVLTVHRTATNVGPAVSKYHVVVSHFKGASVKVEPNTLSFTKKYQKLSYKVTFTTQSPQTEPEFGGLVWKDGVHKVRSPIVITYLSPI 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00012 769 Pfam Peptidase inhibitor I9 25 109 IPR010259 -
Vium349g00012 769 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 13 109 IPR037045 -
Vium349g00012 769 Gene3D - 635 766 - -
Vium349g00012 769 Gene3D - 342 487 - -
Vium349g00012 769 ProSitePatterns Serine proteases, subtilase family, serine active site. 548 558 IPR023828 -
Vium349g00012 769 Pfam Subtilase family 136 589 IPR000209 GO:0006508|GO:0008236
Vium349g00012 769 SUPERFAMILY Subtilisin-like 108 622 IPR036852 GO:0004252|GO:0006508
Vium349g00012 769 CDD Peptidases_S8_3 106 584 IPR034197 -
Vium349g00012 769 Pfam PA domain 374 465 IPR003137 -
Vium349g00012 769 FunFam subtilisin-like protease SBT1.5 342 486 - -
Vium349g00012 769 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 762 IPR045051 -
Vium349g00012 769 ProSiteProfiles Serine proteases, subtilase domain profile. 105 618 - -
Vium349g00012 769 CDD PA_subtilisin_like 348 479 - -
Vium349g00012 769 FunFam Subtilisin-like protease SBT1.9 14 109 - -
Vium349g00012 769 PRINTS Subtilisin serine protease family (S8) signature 547 563 IPR015500 -
Vium349g00012 769 PRINTS Subtilisin serine protease family (S8) signature 134 153 IPR015500 -
Vium349g00012 769 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Vium349g00012 769 Gene3D Peptidase S8/S53 domain 136 631 IPR036852 GO:0004252|GO:0006508
Vium349g00012 769 FunFam Subtilisin-like protease SBT1.5 136 355 - -
Vium349g00012 769 Pfam Fibronectin type-III domain 665 763 IPR041469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00012 Vium-Chr349 117058 119817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00012 3 769 Subtilisin-like Serine Gene Family AT5G51750 70.964 0.0 1141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00012 - - gmx:102661592 1379.77