LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium349g00011	ATGCCATCTCGACAACTCTCCACGTCACCACCACCTTCTAACCGCCGCATCTTAACCCCTCCGGTAACTTCCACCGCCTCCCTTTGCTCTTTATTCTTTTTACTTTGCCTCTGCTTCCGCAAGCGTAAACGCACCACCCCTTCCTCCGACTCCGACTCCACTCCCCCACACCCCTTCTCCTACGCCCTCCTCCGCCGCGCCACCAACTCCTTCTCCACGCGCCTCGGCCACGGTGGCTTCGGTCCTGTCTTCGCCGGCACCCTTGCCGGCGACCCGGTTGCCGTCAAGCTCATGGACTCTGCCTCCCAGCAGGGAGAGCGCGAGTTCCACAACGAGCTCTTCTTCGCGTCCAGGCTTCGGTCCCCCTCTCTCGTCCCCGCCATCGGCTTCTCCTCCGACCCTAAACGTCGGCGTTTCCTCCTCGTCTACCACCTCATGCACAACGGTAACCTCCACGACGCCCTCTTGCGCTCCAAAACCCCTCACCTAACGAGCTGGAAAAACCGCTTCTCCATCATCCTCGACATCGCCAGAGGCATCCACTACCTCCACTCGCTCGACCCCCCGGTCATCCACGGTGACATCAAACCCTCCAACATTCTCCTGGACAACACCTTCTGTGCAAAACTCGCCGACTTCGGTCTTGCACGCTTAAAACCCCATGTCCAAGTCCAAGAGTTGAAAGCAAAGCGCGACGAGAAGAGAAGGGACGAGTCCGAGAGCGATGCTGGGTCGGAGTTAGAAACTGTGAGCGTCAAGACAGAGCAATCGTTTGAAGGTAACACCGGGTCGGATTACGTGATGGATTGGATTGGGAAGGAGTTGAAGAAGGAAAGGCCGACGACGGTGGAGAAGGTTTCTTCTGGGTCGAGCAGTGGATTGGCGGAGAAGAAGAAAAGTAGGAAGAAATTGGAGTGGTGGGAGAAGATGAATGATAGTGGAGTTCCGAAGATGGAGAAGAGAAGGGCCGCGAGGGAATGGTGGAAGGAAGAGTATTCGGAAGAGCTTGCGAGGAAGACGAAGAAAAAGAAAACGAAGGAGAAGAAAAAGAGAAAGGGTGTTAACGGTGATGGTGATTTGGAGATAGATAATGGTGATGTGAATGTGTACAAGAGGGAGAAGAACCGGAGTAGGAAAAGTGGTGGAAGTGTAGATTCTTGGTTGAACGGTGATGTACACGGAGTTGGATGGAACAGCTACGATTCAGGGACTTGTAGCGGTGAAATAGTGGCCAAGAGTGGTGGTGTGAGTAGTACTCCGAGTATGAGGGGAACGGTTTTCTACGTGGCTCCTGAGTATGGATACAATGGAGATGTTTCTGAGAAGTGCGACGTGTACAGTTTCGGGGTTTTGTTGCTTGTTATTGTTTCTGGGAGGCGGCCACTTCAGGTGACAGGGTCGCCCATATCGGAGCTTCAACGTGCGAATCTGGTGTCTTGGGCGAGGATATGTGGTCGGAGGGGAAAGCTTCTAGAAGTGGTGGATGAGGATGTTGAGGGGTTGGACAAAGAGCAGGCTAGTCTGTGCGTGACGGTTGCGCTGGCTTGTTTGCTAAAGTCACCGACCCGTCGACCTTCCATGAAGGAGGTTCTGGGAATGCTAAGTGGGGAGCTGGAGCCTCCACAGTTGCCGCGCAATACTTTCCCCCTCAACTCCAGGAGCCAGGGTCGGTGA	1674	0.5454	MPSRQLSTSPPPSNRRILTPPVTSTASLCSLFFLLCLCFRKRKRTTPSSDSDSTPPHPFSYALLRRATNSFSTRLGHGGFGPVFAGTLAGDPVAVKLMDSASQQGEREFHNELFFASRLRSPSLVPAIGFSSDPKRRRFLLVYHLMHNGNLHDALLRSKTPHLTSWKNRFSIILDIARGIHYLHSLDPPVIHGDIKPSNILLDNTFCAKLADFGLARLKPHVQVQELKAKRDEKRRDESESDAGSELETVSVKTEQSFEGNTGSDYVMDWIGKELKKERPTTVEKVSSGSSSGLAEKKKSRKKLEWWEKMNDSGVPKMEKRRAAREWWKEEYSEELARKTKKKKTKEKKKRKGVNGDGDLEIDNGDVNVYKREKNRSRKSGGSVDSWLNGDVHGVGWNSYDSGTCSGEIVAKSGGVSSTPSMRGTVFYVAPEYGYNGDVSEKCDVYSFGVLLLVIVSGRRPLQVTGSPISELQRANLVSWARICGRRGKLLEVVDEDVEGLDKEQASLCVTVALACLLKSPTRRPSMKEVLGMLSGELEPPQLPRNTFPLNSRSQGR	557

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium349g00011	557	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vium349g00011	557	Pfam	Protein kinase domain	418	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium349g00011	557	MobiDBLite	consensus disorder prediction	227	260	-	-
	Vium349g00011	557	Gene3D	Phosphorylase Kinase; domain 1	57	144	-	-
	Vium349g00011	557	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Vium349g00011	557	Pfam	Protein tyrosine and serine/threonine kinase	71	221	IPR001245	GO:0004672\|GO:0006468
	Vium349g00011	557	SMART	serkin_6	69	534	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium349g00011	557	ProSiteProfiles	Protein kinase domain profile.	69	543	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium349g00011	557	Coils	Coil	329	349	-	-
	Vium349g00011	557	MobiDBLite	consensus disorder prediction	227	243	-	-
	Vium349g00011	557	SUPERFAMILY	Protein kinase-like (PK-like)	53	547	IPR011009	-
	Vium349g00011	557	MobiDBLite	consensus disorder prediction	278	297	-	-
	Vium349g00011	557	MobiDBLite	consensus disorder prediction	338	358	-	-
	Vium349g00011	557	Gene3D	Transferase(Phosphotransferase) domain 1	401	541	-	-
	Vium349g00011	557	Gene3D	Transferase(Phosphotransferase) domain 1	146	254	-	-
	Vium349g00011	557	PANTHER	OS07G0586332 PROTEIN	259	546	IPR044576	-
	Vium349g00011	557	MobiDBLite	consensus disorder prediction	245	260	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium349g00011	Vium-Chr349	105271	107890	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium349g00011	412	534	Receptor kinase-like Gene Family	AT3G58690	34.884	1.12e-11	65.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Vium349g00011		PK_Tyr_Ser-Thr	4.1e-25	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium349g00011	-		-	pvu:PHAVU_007G064200g	919.842