Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00008 ATGAATCCTTTACACCCTACTGATGAGTTGTACTTTCAGATTACAACCCCTCCAGAAAATCAGATCTTCTATGATCCTGTGCTCGATGGTAGTGCTCCCATTCCCTGTACAGCTCAAATGGGCACTACCAAGGGCAAGCGTAGAGGAAAGTTACCAGCTTGGACAAAGGAAGATTATAAGACCACCACCATGGATGAAAACAAGAGGTGGATGCATAGAGAGACTGAAAAACAAAGAAGGCAAGAAATGACCAGGCTTTGCACTGACTTTAGATCTCTTCTGCCTCTTCAATATATCAAGGGAAAACGCTCAATTTCTGATCACATGCATGAGGGTGCAAATTACATCAAACACCTTGAAAATAATGTGAAAGAGTTGCAAGCTAAGAGAGACGAGTGTAAGAAGTTGTCCAATTTGAGTCCTGTTGTTGTTTCTGATAGTGGAAGCTTTAGCACTACCGATATTCCGATATGTGTCATTGTTCATCCTTTTCCGGGAGGTATTCAGATTAAGTGTAGTTACAGCTTCAGAAAATATGTCTTTCCTTTGTCAAGAGTGATAGATATGGTGCTTAAAGAAGGGCTTGATGTGGTCAACTGTACCTCTACCAAAACAGATGACAGCTTCATACACACTATCCGAATAGAGGTTCCACATACCATGACTGGGACTAATTACACTGAACTGCAAAAGAAGCTTGTCGAAGCGATATCATCTTCATGTTCGGAGGAGATACTATCTGAATCTGAAAACTGCTGA 759 0.4124 MNPLHPTDELYFQITTPPENQIFYDPVLDGSAPIPCTAQMGTTKGKRRGKLPAWTKEDYKTTTMDENKRWMHRETEKQRRQEMTRLCTDFRSLLPLQYIKGKRSISDHMHEGANYIKHLENNVKELQAKRDECKKLSNLSPVVVSDSGSFSTTDIPICVIVHPFPGGIQIKCSYSFRKYVFPLSRVIDMVLKEGLDVVNCTSTKTDDSFIHTIRIEVPHTMTGTNYTELQKKLVEAISSSCSEEILSESENC 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00008 252 FunFam Transcription factor bHLH126 59 147 - -
Vium349g00008 252 Pfam Helix-loop-helix DNA-binding domain 68 120 IPR011598 GO:0046983
Vium349g00008 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 138 IPR036638 GO:0046983
Vium349g00008 252 Coils Coil 109 139 - -
Vium349g00008 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 119 IPR011598 GO:0046983
Vium349g00008 252 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 65 235 - -
Vium349g00008 252 Gene3D - 58 140 IPR036638 GO:0046983
Vium349g00008 252 CDD bHLH_AtORG2_like 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00008 Vium-Chr349 76614 78304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00008 72 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 38.150 1.25e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium349g00008 HLH 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00008 - - gmx:100803786 355.525