Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00007 ATGCAGTTTAAATGTTTCAGCTGTTTTCTCTGTGATAAAGAGCAATCCGAGATACAAAACGAGAAGGAGAAGAAGAAAAGGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTTCGTGCAACAAACAATTTCCATCAAGATAATAAGATAGGAGAGGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCGTCGAGATCGCAGTGAAGCGGTTGAAGATGATGACTGCAAAGGCAGAGATGGAGTTTGCAGTGGAAGTGGAAGTACTAGGAAGGGTGAGGCATAAGAATTTGTTGGGGTTGCGTGGATTCTATGCAGGAGGTGAAGAAAGGTTAATTGTGTATGATTACATGTCTAATCACAGTTTGCTCAATCATTTGCATGGTCAACTTGCCAAAGATTGTTTGTTAGATTGGCCTAGAAGAATGAGCATAGCAATTGGAGCAGCTGAAGGCTTGGTGTATTTGCACCATGAGGCAAATCCTCACATCATTCATAGAGACATAAAAGCAAGCAATGTTCTTTTAGACTCTGAATTTGAAGCGAAGGTTGCTGATTTTGGGTTTGCTAAGCTGATACCAGAGGGTGTAAGCCATCTGACAACAAGGGTTAAAGGCACCCTTGGATATTTGGCTCCAGAATATGCCATGTGGGGGAAGGTTTCTGAGAGCTGTGATGTTTACAGTTTTGGGATTTTGCTTTTGGAGATTGTGAGTGCCAAGAAGCCAATTGAGAAACTTCAAGGCGGAGTGAAAAGAGATATAGTTCAGTGGGTTACACCTCATGTTCAAAAGGGTAACTTCACTCATATCGTTGATTCAAAATTAAAGGGACGATTTGATTTAGAGCAGTTGAAATCTGTGATCATGATAGCTATAAGGTGCACAGAAAGTAATCCAGAAAAAAGGCCTAGCATGGTAGAGGTCGTGGAGTGGCTCAAGGGTGGCATTGGGAGGAGAAAAAAAGAGATTCCAAATTTAATTCACACTAATGAAGATGATAAATATGAAGAAAACTATGGAGAGATTAGAAGAACACAGTCCAAGTTGAAAATACCAAGTGATGATGATAAACTTAGAATAAGATAA 1101 0.4033 MQFKCFSCFLCDKEQSEIQNEKEKKKRDYPWEIYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGVEIAVKRLKMMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGEERLIVYDYMSNHSLLNHLHGQLAKDCLLDWPRRMSIAIGAAEGLVYLHHEANPHIIHRDIKASNVLLDSEFEAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKLQGGVKRDIVQWVTPHVQKGNFTHIVDSKLKGRFDLEQLKSVIMIAIRCTESNPEKRPSMVEVVEWLKGGIGRRKKEIPNLIHTNEDDKYEENYGEIRRTQSKLKIPSDDDKLRIR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00007 366 FunFam PTI1-like tyrosine-protein kinase At3g15890 18 121 - -
Vium349g00007 366 CDD STKc_IRAK 52 319 - -
Vium349g00007 366 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Vium349g00007 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vium349g00007 366 Gene3D Transferase(Phosphotransferase) domain 1 122 328 - -
Vium349g00007 366 Pfam Protein kinase domain 46 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium349g00007 366 FunFam PTI1-like tyrosine-protein kinase At3g15890 122 332 - -
Vium349g00007 366 Gene3D Phosphorylase Kinase; domain 1 8 121 - -
Vium349g00007 366 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 321 - -
Vium349g00007 366 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium349g00007 366 SUPERFAMILY Protein kinase-like (PK-like) 28 325 IPR011009 -
Vium349g00007 366 ProSiteProfiles Protein kinase domain profile. 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00007 Vium-Chr349 53451 55196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00007 26 319 Receptor kinase-like Gene Family AT5G45780 45.667 5.03e-85 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vium349g00007 Pkinase 6.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00007 - - gmx:100817283 674.085