Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00005 ATGTTTGTGTCTGGGCAAGTGGATCCCTTCCACCATCTGAAAATCCTCCCAAACTCAGACGGCACCATCACTCGCCTACGTGCAGACCCACACACTCATCCAACTTTCGATCCCACCCTCCCCATCCCCGTTCTCACCCAAGACACAACCATCAACCAATCAAACAAAACCTTCGCCCGCATATTCCTCCCACGTCCTGCGCTCCATAATTCCTCCACCAACCTCCCTCTCATCGTTTTCTTCCACGGCGGCGGCTTCATCCTATTCAGCGCCGCCACACACTTCTTCCACGACGCCTGCGTAAACCTCGCAAAAGACACCAATTCCATCGTCGTTTCCGTCGACTACCGTCTCGCCCCCGAACACCGACTCCCCACTGCCTATGACGACGCCGTCGAAGCGCTTCACTGGCTTAAATCCAAGCCACACGATTGGTTGAGAAACCACGCCGACTATTCCAACTGTTACCTCATGGGAAGTAGCGCCGGAGCGAACATCGCGTACCACGCGGCTCTACGTGTGGCGGCCGAAACTAGCTCTGATGGGATTAATTACCTGGAGCCACTTAAGATCCGAGGGATGATATTGAGTCAACCGTTTTTCGGGGCCACAGAGAGGGTTCCTTCTGAGATGAGGCTTGCGGAGGATCCGGTTTTGGCGCCGCACGTGTGTGACGTGCTGTGGGATCTGTCGTTGCCAGTTGGGGTTGACCGCGAGCACGAGTATTGCAATCCTCGTGGTGGCAATGGCGGCGTGATTTTGGAGAGAGTGAGGGAGCTGGGGTGGCGCGTGTTGGTGAGTGGGTGCCAAGACGACCCTCTGGTCGACCATCAGATTGGTCTGGCCACACTGGTGGCGGAGAAGGGCGTTCCCGTTCTGACGAACTTTAGTCTAACGGGATCCCATGGAGCTGAAGTTCGCGATCCTCTCCACCAAAACCGGCTCCATCACCTCGTTAAACATTTCATTGCTCCTCCTCCTCCCTCCATCCACAATTTATCACCTCAAAACTCTGCTTAA 1020 0.5529 MFVSGQVDPFHHLKILPNSDGTITRLRADPHTHPTFDPTLPIPVLTQDTTINQSNKTFARIFLPRPALHNSSTNLPLIVFFHGGGFILFSAATHFFHDACVNLAKDTNSIVVSVDYRLAPEHRLPTAYDDAVEALHWLKSKPHDWLRNHADYSNCYLMGSSAGANIAYHAALRVAAETSSDGINYLEPLKIRGMILSQPFFGATERVPSEMRLAEDPVLAPHVCDVLWDLSLPVGVDREHEYCNPRGGNGGVILERVRELGWRVLVSGCQDDPLVDHQIGLATLVAEKGVPVLTNFSLTGSHGAEVRDPLHQNRLHHLVKHFIAPPPPSIHNLSPQNSA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00005 339 Gene3D alpha/beta hydrolase 10 325 IPR029058 -
Vium349g00005 339 SUPERFAMILY alpha/beta-Hydrolases 26 309 IPR029058 -
Vium349g00005 339 Pfam alpha/beta hydrolase fold 78 298 IPR013094 GO:0016787
Vium349g00005 339 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 78 94 IPR002168 GO:0016787
Vium349g00005 339 PANTHER ARYLACETAMIDE DEACETYLASE 25 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00005 Vium-Chr349 47958 49209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00005 19 254 Carbohydrate Esterase AT5G16080 38.776 3.53e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00005 - - pvu:PHAVU_007G064700g 626.32