Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3499g00002 ATGAACCCTCATGTTGAAGGTGGGTCAGCTGGACAAGCTAATGCAAGCAATCAAAATTATTGTAGGCATCACCTTTCTAGTGAAACACAGGAGAGGCTGCTTCCCTTATTTCCCCTCTTTGCTACTGAGGAAGGGTTTCCTGAGCCAGAAGTGAATCTTCCTCAACAAGGTGGCAACAACATTGGTGCCACAACTGATGTTCCACTTGAGGAAACCCCTAATGTTGTAGCACCGGAATCAAACATTTTCTCTTCAAGGCCCCTTGCTGGAAATCCTCTGGAAAATGTCGACTTGTGTCTGAACATTGGTTTCAGCCGTCAGGCTGCAGCAATATCTTCTGCTGTGATTCCAAGTTCAAATCTTGCACGTAGCGTGCATGGAAGCAACTCAAACTCCGTGAGCATTCCAAGAAAAAGAGGTTCTGGAGAATTTCATCGGGGTGAAAGTTCAAACATGGGTGAAGGGACAGGAGAGGTCAAAAGACTTGCTACTGAGTCTCAGGTGAGAGCTAACAACAATGTGAACCCGTCACCACCATCACTTTCTTTGGTGCAACAAGAGTATCAATTCCTCCGTGGCCCCCATGTTAATCCAAACAATGAAGGGACACCTTTTCCTACACCCAATACCCCTGACGGGATGACTAATACTGATGATGAAAGAAGAGGTTATCATGCTCCGATACCAAGTCACGCGAGTTTGCCTTTCAACGGAACCTCATCACATTCCCAACTGTTTCCTCTGCAACCCTCACATTCCGTTCGGCCTCTATCCCTTCTCAGTAATTCATTCATGTCCAGTTCTATCCCCAACCTTAACAACCCAACCGTGCGGAATGCTCATCACTTAATATCCTCTCCGTGTCCTCACGCTAGAATCGATAATATGATTCCATTTTTTGAACATAGAAATGACATGTTTGGTCCTCTAGTTACATCCAGTTATCGACCAAACGGGTCTTACGTTGATAGTGATCGAGAGACTATTAGAAGGGCTCTTCTTTATGGTCTCCGTCAGTTCGAAGCCCCGGAATCGGAACCACTGCAATTACTACCTGGAATTATGGGCAATGGTGGCAGAGTTAGTAATGCTGGAGCCAATACGTACCACCCTCTGAGTGATTATAGCGCTACAGCTTGGTTTCTTCCACAGGGCTCACGAGGAACGAACCATTCTGCTCCAGCAAGTAGTTCTGGCACTCAGAATCATCATAGGCCAATACCACAATCTCCTTCTCTTGAATCACTAAGGGAGCTTCCATCTGAGATTGAGCACCCTGGAGTATTTGGGACGTCGCAAGCATTCACGGGACTAAGTCTGGAAACGATAATGCAGTTCATGGAGCGTGAAATTTTCTTGGTTGATGAAGATGTCTCAGAAGAAACTAAAGAAAGATGTCCCGTCTGTCTGGAAGAATTTTGCAGGGGAGAGGATATTGGGAAGCTGCATTCGTGTGTTCACAAGTTTCACTTTGATTGCATCAAAGAGTGGCTCATGCAGAGGAATCTTTGCCCCGTCTGCAGAAGAACCGCGTTGGAAAGGCCTAATGACCCAAGTCTACTATATATACTTTGA 1575 0.4584 MNPHVEGGSAGQANASNQNYCRHHLSSETQERLLPLFPLFATEEGFPEPEVNLPQQGGNNIGATTDVPLEETPNVVAPESNIFSSRPLAGNPLENVDLCLNIGFSRQAAAISSAVIPSSNLARSVHGSNSNSVSIPRKRGSGEFHRGESSNMGEGTGEVKRLATESQVRANNNVNPSPPSLSLVQQEYQFLRGPHVNPNNEGTPFPTPNTPDGMTNTDDERRGYHAPIPSHASLPFNGTSSHSQLFPLQPSHSVRPLSLLSNSFMSSSIPNLNNPTVRNAHHLISSPCPHARIDNMIPFFEHRNDMFGPLVTSSYRPNGSYVDSDRETIRRALLYGLRQFEAPESEPLQLLPGIMGNGGRVSNAGANTYHPLSDYSATAWFLPQGSRGTNHSAPASSSGTQNHHRPIPQSPSLESLRELPSEIEHPGVFGTSQAFTGLSLETIMQFMEREIFLVDEDVSEETKERCPVCLEEFCRGEDIGKLHSCVHKFHFDCIKEWLMQRNLCPVCRRTALERPNDPSLLYIL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3499g00002 524 MobiDBLite consensus disorder prediction 200 214 - -
Vium3499g00002 524 MobiDBLite consensus disorder prediction 122 158 - -
Vium3499g00002 524 SUPERFAMILY RING/U-box 450 514 - -
Vium3499g00002 524 MobiDBLite consensus disorder prediction 122 137 - -
Vium3499g00002 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 512 IPR013083 -
Vium3499g00002 524 MobiDBLite consensus disorder prediction 386 409 - -
Vium3499g00002 524 Pfam Ring finger domain 465 508 IPR001841 -
Vium3499g00002 524 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 115 512 IPR045191 GO:0061630
Vium3499g00002 524 MobiDBLite consensus disorder prediction 197 216 - -
Vium3499g00002 524 ProSiteProfiles Zinc finger RING-type profile. 466 508 IPR001841 -
Vium3499g00002 524 MobiDBLite consensus disorder prediction 386 412 - -
Vium3499g00002 524 SMART ring_2 466 507 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3499g00002 Vium-Chr3499 44030 46829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3499g00002 436 515 C3H Transcription Factor Family AT2G15530 42.169 1.41e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3499g00002 - K10635 vra:111241966 874.389