Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3499g00001 ATGAATCCTGAAGGTGGCGGATCAGTTGGAGAAGCTGACGAAAACAACCAAAATGAGGAAGGGCTCCTTGAAGAAGGGTTTGGTGAGGCAGAAGTGAATGTCGCTGAACAAGGTGAAAACAACAATGGTGTTTCTGTTCATGAAACCCTTAATGCTGTAGCACTGAATTCTAACATCTCCTCTTCAAGCTTCCATGTTGGAAGCAGCTCGAACACCGCGAACATTCCAAGAAAAAGAAACTTGTGTAGTTCTGGACAATTTTACGAGGGTGAAAGTTCAAACATGGGTCAACAACAGACAGGAGAGGCTAAAAGGCTTGCTACTGAGTCTGGGGTTGGAGCTAACAACATTAATGTGAGCCAACAGAATACAGGAACACCCATTCCAGCACCCAATACCGGTGCTAACAGAAACGAGAATACTGATACTGGGAGAAGAGCTTCTTATGCTGGACATCCTCAGCAACGCTTACGTTCTGTTCAGCCTATATCTTTTCTGGGTAGTTCATTCGTGCCCAGTGCTACCACCACTGTGAGCGGCGTAACCGTGAGGACTACCCCTCTCACCCGCTGTCCACACCCAAGAGTTGATATTATAATTCCGTTTTATGAACATGGTAGCACTTCAACTTGGGCTCCCCCACAGGGCACACCAAGAATGAACCATTATGCTGCAGGAAGCAGTTCTGGCACTCAGAACAATCAAACTTCTCAGCAAACACCACCATCTGCACTCCCACCCAATATTATTTCTCCTGAGTTGAGAACAAGGCTTCCATCTGAGGTTCGATCTATCTTGGATTCTCTAAGCAATGGTGGCGGTCTAATCTTTGAGATAGAGAACCCTGAACCATCTACGGGACTAAGTCTCCAAACGATCATGCAACACATGGAGCGTGAGACTTGGGTGGATGTTGATGGAGATGGCCCAGTAGAGCATCCACAAAGATGCACCATATGTCTGGAAGACTTTGACAACGGATCAGAAATCGGGAAGATGCAGTTATGTGATCACAAGTTTCACTTTGATTGCATCAAACAGTGGCTCATGCAGAAGAACATTTGCCCTGTGTGCAGAAGAGTTGCATTGGAAAGGCATCTGAGCAGCCCAAATGTAGAATATGGTTATTTCTTTCTTTAA 1140 0.457 MNPEGGGSVGEADENNQNEEGLLEEGFGEAEVNVAEQGENNNGVSVHETLNAVALNSNISSSSFHVGSSSNTANIPRKRNLCSSGQFYEGESSNMGQQQTGEAKRLATESGVGANNINVSQQNTGTPIPAPNTGANRNENTDTGRRASYAGHPQQRLRSVQPISFLGSSFVPSATTTVSGVTVRTTPLTRCPHPRVDIIIPFYEHGSTSTWAPPQGTPRMNHYAAGSSSGTQNNQTSQQTPPSALPPNIISPELRTRLPSEVRSILDSLSNGGGLIFEIENPEPSTGLSLQTIMQHMERETWVDVDGDGPVEHPQRCTICLEDFDNGSEIGKMQLCDHKFHFDCIKQWLMQKNICPVCRRVALERHLSSPNVEYGYFFL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3499g00001 379 SMART ring_2 317 358 IPR001841 -
Vium3499g00001 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 363 IPR013083 -
Vium3499g00001 379 MobiDBLite consensus disorder prediction 210 251 - -
Vium3499g00001 379 Pfam Ring finger domain 316 359 IPR001841 -
Vium3499g00001 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 61 363 IPR045191 GO:0061630
Vium3499g00001 379 MobiDBLite consensus disorder prediction 210 244 - -
Vium3499g00001 379 MobiDBLite consensus disorder prediction 1 28 - -
Vium3499g00001 379 MobiDBLite consensus disorder prediction 116 155 - -
Vium3499g00001 379 SUPERFAMILY RING/U-box 316 364 - -
Vium3499g00001 379 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3499g00001 Vium-Chr3499 28459 32554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3499g00001 261 364 C3H Transcription Factor Family AT2G15530 34.906 6.85e-14 71.2