Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3494g00008 ATGTCCTTCAATCAATCAAAGGTGGAAAAGAACGACGTCGTTTACAGAAGAAACGGACGATCATCCACCTTTAACCAGCAAAGAGGTTCCTACGGCAAAGCTGCTGGCGATGGCGGTGGAATCGCGCCGTCAAACAATTCATTATCCACTGCCCGAAGGCTAAATCCTTCCCAGGGAAATTCAACAGAATCAAATAATGCATCTGCTGCTCGGAACATTAGTAATGGTATCCATGGACAGTCCCACTTACATGGTGCACCAGATGGGCCAATTACAAAGTCATCTGAATCATCAGCTGGGCATAAGAGCACTGGAATTGTTCCAAAGGCTGAAACTGCTACATTGCCCCCTTTAATTTCTGATCCAGTACTTCCCACAAGCCTTGCTAAGGGAGATGATGAGTCTAAGGCATTCCCTTTTCAATTTGGATCCATTGTTCCTGGCGTCATTAATGGGATGGCAATTCCTGCTCGTACAAGTTCAGCTCCTCCTAGTTTTGATAAGCAGAAGCCTGATCAGGCTCTTGATGACTCTGACAAATCTGTGTCTTCGGATCCAATTCCTCCTGTTCCAAAGCAGCAGAAATCACACGAGAAAGATGCTGGTGTCAATGAGCAATCTAACGTTGAGATTAAGGACAACAAGGATTCTGAGGTGTCAATTTTAACCTCAGTAAATCAGATGTCAAAACCCTTTGTTGCTCCTGTAACTGGGATTTCAGTCTCAACTTCATATCACCAATCACAGGCTCCTTTACAGTTTGGAGGTGCTAAACCACAGATTCAATCTCATGGCATGACAACAACGTCCATCCAAATGCCTATACCGATGCCTTTACCAATTGGTAATGCTACACAAGTGCAACAGCCGGTTTTTATTCCAGGTCTTCAACCTCATCCAATGCATCCTCAAGGGATCATGCATCAAGGCCAAAACATTAGTTATTCTCCTCAAATGGGTAATCAATTAGGCAACATGGGCATTGGCATAGGTTGTCAATATCCACAGCAGAAAGGAGGAAAATTTGCAAGTCCTCGGAAAACTACCCATGTAAAGATAACTCATCCTGAGACACATGAAGAGTTAAGACTTGATAAAAGGATGGATGCATTCTCAAATGGTGGGTCATCTTGTGTTAGACCACATCCTAACATACCTTCTCAATCCCAGCCTGTTAAATCTTTTCCGGCTTCTCATCCTATGAACTATTTTCCATCCAACTCGTATAATACAAATTCTCCTTATTATCCACCTAATTCTCTCCCATTAACAAGTAGCCCAATGACTCCTAATTGTCAACCAACAACATTTAATTTTCCTCTGCACCATGGTCCCCAAGGTGTGAGTTTTATGAATTCATCTTCACATGGTTCCTCGCCTACTAATAAAACTAGCACTCCAGCAGGGATTACATCTATGACCATTAAGCCTAATGGTACAACTTCTATAGTGGACTCCTCCTTGTCGAATTCCTGTATTGCTGATGTTCAAAATGGAGAATCCCCTGGTTCAACAATATCTTGTGATGTTAGCTCCTCTGTGCTGCAAAAAGGATCAGAAACCTGTTCAGAAGTTTCTCCACAACAATCTAAGTTTTCTAGTGATTTTGTCACAAATGTGTCTAATAATGAAGGTGGAAGGGAATCTCTCGCTATCTCCAACTCTTTGAAGGATAAAAAACCAGGGAAGAAAGATCAAATAACACAAAATCAGGTTTCTGTACTATCTCCCACAATGGACTCTATACGTTCTGGAGTTGTTGATCAAAATATATCTGATATTGGAGTACCCGATGCTTTAGGAACTAAAAAAAATTATTCTGCAGCAATTACTATTGAAGATATTCCAGGATCTGATACAATTTCAACTGGTGTTGAAGTGGAGACCAATGGGTCTGTAGACGCTTCTGCTTATGTTTCAGTGGAAGGATGTGGTGCACAAACTATTGACAAAGTTCACAATCAGATGCCTGATAAGACATATAAATTAGTTGAAGGAAACTTTGGCTCATCAGATCTGCAGTCTACTGATCTTCCAAAAACAACACTAAAGCATTTTAAGAACGATTCAGAGAATGTTGATGTTGAGTCAGGTACCAAGGATAGACCAATTATAGAACCAAATAAGGTGAAAAACCAATCTAAAGGAAAGAAGAAGAGAAGAGAGATACTTCAGAAAGCAGATGCCGCTGGGTCAACTTCTGATCTTTATAATGCATACAAGGGACCTGGGGAAAAGAGAGATGTCTTAAGTTCTGAGAGCAAGGAAAGTGTTACTAGTCCTCTAAGCTTGAAACAATTTGATGTTGGTCAGTCTGATATTAAAGCCAGTGAGAAATGTGATCATAATAAAGTTGAGCTTGATGATTGGGAGGATGTTGCTGACATGTCTACCCCTAAACTGGAGGTTCATGACATATCTCAAAAAGTAGGTGAAGGACATGGAAGTACAACCAAAAAATATTCACGTGATTTCCTTCTGAAATTTGTAGAGCAGTGCATTGATCTTCCTGAAGGTTTTGAAATCACTGCAGACATTGGAGCTTTGATGAATGCCAATATTGGCGGCTCTCATATTTTTGAGCGTGATTCACATCCTAATCCTGGAAGAGCTGTAGGTGGGTTGTCTCGGATGGATCGTCGTGGCGATGTGATTATGGAGGACGATAGATGGAACAGAGTTTCTGGTTCTTTTCGTTCTGGACGTGGTCCAGAAGGCACCGGAGGAAATTCAGGATTTCGATATGGCCATGGAGGCAACTTTGGTGTTTTAAGGAATCCTCGTGCACAAACACCTCTACAATACGGTGGAGGGATCCTTTTTGGGCCAATGCAATCTGGGGGAAATCAAGGTGGAAGAAATATCCCTAATGGGGAGAGATGGCAGCGATCTGCTAGCTTCCAGCAGAGGGGTTTAATTCCTTCTCCAAACCAAACTCCTTTACAAATAATGCACAAAGCTGAGAATAAGTACGAAGTGGGTAAAGTGACAGATGTGGAAGAGGTAAAACAGAGGCAGTTGAAAGCTATCTTAAACAAACTAACACCACAAAATTTTGACAAACTCTTTGAAAAGGTGAAAGAAGTTAATATTGACAATGCAATCACCCTCATCGGTGTCATTTCACAAATATTTGAGAAAGCTCTTATGGAACCTACCTTTTGTGAAATGTATGCCAACTTTTGTTTACATTTGGCTTCTGAGTTGCCTGATTTTAGTGAGGACAATGAAAAAATAACTTTTAAAAGGTTATTATTGAACAAGTGCCAAGAGGAATTTGAGAGGGGTGAAAGGGAAGAAGAAGAAGCAAATAAGGCTGATGAGGGTGAGGTTAAGCAGTCTACTGAGGAAAGGGGAGAAAGAAGAGTTAAGGCAAGAAGACGAATGTTGGGAAACATTAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCATGAGTGTATCAAGAAGTTACTGGGTCAATATCAAGATCCAGATGAAGAAAACATTGAAGCTTTGTGCAAGCTAATGAGTACTATTGGGGAGATGATTGACCATCCAAAAGCCAAGGAACATATGGATGCATATTTTGAAAGGATGAAGTTATTATCAATCAACATGAATTTATCTTCTAGGGTGAGGTTCATGTTGAAGGATGCCATTGATTTGAGAAAGAATAAATGGCAACAAAGGAGGAAAGTAGAAGGTCCCAAAAAGATTGAGGAGGTACATAGGGATGCTGCTCAGGAAAGGCAATCCCATGCTGGTAGGTCAAATCGTGGTCCTGGTAACAATCAATCAAGTAGAAGGAATCCCATTGATTTTAGTCCAAGAGTGTCGTCTTCTAATTCTCAAATGGGTGGATTATGTGGTCTTCCAACTCAAGCACGTGGCTATGGTGGCTCTCAGGATGCTCAATTTGAAGAACAACAATCTTATGAAGCTAAGACTTTGTCAGTTCCTTTGCCTCAAAGATCTTTAGGAGATGACTCTATAACCTTGGTACCTCAAGGTGGTCTTGCTAGGGGAATGTCTATGAGAGGATCAACCACAATTTCCAATCTTCCAATATCTGATGTGGTTCCTGTGCCTAGAGACCCTCATATAATGACTGCAGGTCTTAATGGTCAGAGTAATTCATCAGAGCGCACACAATATAACTCAATGGAGGATCTTGGGTCAAGACGTGGTACTAACAGGTCTTTAGGTCCATCTACTCATGATCAATCAATTGCCCCTGAGCATAATGTAAACCATGGTAACAGAAACTTGAAGAGTGTTTCACCTGCTGCTCAATTGCAAGGATCCATAATCTCTCAGAATTCTTATTCAGATAAGATTGTGTCAGAAGAAGAACTGAGAGACATGTCCTTGTCAGCCATAAGAGAATACTACAGTGCTAGAGATGAGAAAGAACTTGTTTTGTGTATCAAAGATTTGAACTCTCCAAGCTTTTATCCTTCTATGGTTTCTCTCTGGGTCACAGATTCATTTGAGAGAAAAGACACAGAAAGAGATCTTCTTGCCAAACTACTTATCAACCTAGTGAAATCTCAACATCACACCTTGAGTCAAGTCCAACTCATCAAAGGGTTTGAATCTGTTCTCTGTACATTGGAGGATGTCGTTAATGATGCCCCTAGAGCAGCTGAGTTTCTTGGCCTAATTTTTGCTAAAGTCATAATAGAGAGAGTAGCTACTTTTACTGAGATTGCACAATTAATACATGATGGTGGAGAAGAGCCTGGTAGTCTCTTAGAAATTGGACTTGCAGGTGATGTTCTTGGAAGCACGTTGGAGGTAATTCAAAATGAAAAGGGTGACGTGCTTCTAAATGAGATTCTTTCAGGAAGCTCTAATTTCCAATTGAAAACTTTCCAGCCACCTAATGCTAAAATATCAAGGAAGTTGGAAAAATTTATTTAG 4923 0.4059 MSFNQSKVEKNDVVYRRNGRSSTFNQQRGSYGKAAGDGGGIAPSNNSLSTARRLNPSQGNSTESNNASAARNISNGIHGQSHLHGAPDGPITKSSESSAGHKSTGIVPKAETATLPPLISDPVLPTSLAKGDDESKAFPFQFGSIVPGVINGMAIPARTSSAPPSFDKQKPDQALDDSDKSVSSDPIPPVPKQQKSHEKDAGVNEQSNVEIKDNKDSEVSILTSVNQMSKPFVAPVTGISVSTSYHQSQAPLQFGGAKPQIQSHGMTTTSIQMPIPMPLPIGNATQVQQPVFIPGLQPHPMHPQGIMHQGQNISYSPQMGNQLGNMGIGIGCQYPQQKGGKFASPRKTTHVKITHPETHEELRLDKRMDAFSNGGSSCVRPHPNIPSQSQPVKSFPASHPMNYFPSNSYNTNSPYYPPNSLPLTSSPMTPNCQPTTFNFPLHHGPQGVSFMNSSSHGSSPTNKTSTPAGITSMTIKPNGTTSIVDSSLSNSCIADVQNGESPGSTISCDVSSSVLQKGSETCSEVSPQQSKFSSDFVTNVSNNEGGRESLAISNSLKDKKPGKKDQITQNQVSVLSPTMDSIRSGVVDQNISDIGVPDALGTKKNYSAAITIEDIPGSDTISTGVEVETNGSVDASAYVSVEGCGAQTIDKVHNQMPDKTYKLVEGNFGSSDLQSTDLPKTTLKHFKNDSENVDVESGTKDRPIIEPNKVKNQSKGKKKRREILQKADAAGSTSDLYNAYKGPGEKRDVLSSESKESVTSPLSLKQFDVGQSDIKASEKCDHNKVELDDWEDVADMSTPKLEVHDISQKVGEGHGSTTKKYSRDFLLKFVEQCIDLPEGFEITADIGALMNANIGGSHIFERDSHPNPGRAVGGLSRMDRRGDVIMEDDRWNRVSGSFRSGRGPEGTGGNSGFRYGHGGNFGVLRNPRAQTPLQYGGGILFGPMQSGGNQGGRNIPNGERWQRSASFQQRGLIPSPNQTPLQIMHKAENKYEVGKVTDVEEVKQRQLKAILNKLTPQNFDKLFEKVKEVNIDNAITLIGVISQIFEKALMEPTFCEMYANFCLHLASELPDFSEDNEKITFKRLLLNKCQEEFERGEREEEEANKADEGEVKQSTEERGERRVKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQDPDEENIEALCKLMSTIGEMIDHPKAKEHMDAYFERMKLLSINMNLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQERQSHAGRSNRGPGNNQSSRRNPIDFSPRVSSSNSQMGGLCGLPTQARGYGGSQDAQFEEQQSYEAKTLSVPLPQRSLGDDSITLVPQGGLARGMSMRGSTTISNLPISDVVPVPRDPHIMTAGLNGQSNSSERTQYNSMEDLGSRRGTNRSLGPSTHDQSIAPEHNVNHGNRNLKSVSPAAQLQGSIISQNSYSDKIVSEEELRDMSLSAIREYYSARDEKELVLCIKDLNSPSFYPSMVSLWVTDSFERKDTERDLLAKLLINLVKSQHHTLSQVQLIKGFESVLCTLEDVVNDAPRAAEFLGLIFAKVIIERVATFTEIAQLIHDGGEEPGSLLEIGLAGDVLGSTLEVIQNEKGDVLLNEILSGSSNFQLKTFQPPNAKISRKLEKFI 1640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3494g00008 1640 FunFam Eukaryotic translation initiation factor 4G 1004 1239 - -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 734 761 - -
Vium3494g00008 1640 FunFam Eukaryotic translation initiation factor 4G 1445 1639 - -
Vium3494g00008 1640 Pfam MA3 domain 1457 1563 IPR003891 -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 689 720 - -
Vium3494g00008 1640 Coils Coil 1086 1106 - -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 1096 1122 - -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 1226 1309 - -
Vium3494g00008 1640 Pfam MIF4G domain 1004 1226 IPR003890 GO:0003723|GO:0005515
Vium3494g00008 1640 ProSiteProfiles MI domain profile. 1451 1575 IPR003891 -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 443 477 - -
Vium3494g00008 1640 SMART if4_15 1004 1226 IPR003890 GO:0003723|GO:0005515
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 1 131 - -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 1390 1422 - -
Vium3494g00008 1640 Gene3D - 1443 1640 - -
Vium3494g00008 1640 Gene3D - 1004 1239 - -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 689 712 - -
Vium3494g00008 1640 SUPERFAMILY ARM repeat 1000 1228 IPR016024 -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 192 215 - -
Vium3494g00008 1640 SMART ma3_7 1452 1566 IPR003891 -
Vium3494g00008 1640 SUPERFAMILY ARM repeat 1447 1638 IPR016024 -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 1226 1252 - -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 156 215 - -
Vium3494g00008 1640 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 314 1639 IPR045208 GO:0003743
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 1253 1289 - -
Vium3494g00008 1640 MobiDBLite consensus disorder prediction 42 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3494g00008 Vium-Chr3494 84676 94327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3494g00008 1 1639 Eukaryotic Initiation Factors Gene Family AT3G60240 44.265 0.0 1200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3494g00008 K03260 - gmx:100798562 2383.22