Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3494g00007 ATGGCGGTGGAATCGCGCCGTCAAACAATTCATTATCCACTGCCCGAAGGTGGACAATCTAGGCTAAATCCTTCCCAGGGAAATTCAACAGAATCAAATAATGCATCTGCTGCTCGGAACATTAGTAATGGTATCCATGGACAGTCCCACTTACATGGTGCACCAGATGGGCCAATTACAAAGTCATCTGAATCATCAGCTGGGCATAAGAGCACTGGAATTGTTCCAAAGGCTGAAACTGCTACATTGCCCCCTTTAATTTCTGATCCAGTACTTCCCACAAGCCTTGCTAAGGGAGATGATGAGTCTAAGGCATTCCCTTTTCAATTTGGATCCATTGTTCCTGGCGTCATTAATGGGATGGCAATTCCTGCTCGTACAAGTTCAGCTCCTCCTAGTTTTGATAAGCAGAAGCCTGATCAGGCTCTTGATGACTCTGACAAATCTGTGTCTTCGGATCCAATTCCTCCTGTTCCAAAGCAGCAGAAATCACACGAGAAAGATGCTGGTGTCAATGAGCAATCTAACGTTGAGATTAAGGACAACAAGGATTCTGAGGTGTCAATTTTAACCTCAGTAAATCAGATGTCAAAACCCTTTGTTGCTCCTGTAACTGGGATTTCAGTCTCAACTTCATATCACCAATCACAGGCTCCTTTACAGTTTGGAGGTGCTAAACCACAGATTCAATCTCATGGCATGACAACAACGTCCATCCAAATGCCTATACCGATGCCTTTACCAATTGGTAATGCTACACAAGTGCAACAGCCGGTTTTTATTCCAGGTCTTCAACCTCATCCAATGCATCCTCAAGGGATCATGCATCAAGGCCAAAACATTAGTTATTCTCCTCAAATGGGTAATCAATTAGGCAACATGGGCATTGGCATAGGTTGTCAATATCCACAGCAGAAAGGAGGAAAATTTGCAAGTCCTCGGAAAACTACCCATGTAAAGATAACTCATCCTGAGACACATGAAGAGTTAAGACTTGATAAAAGGATGGATGCATTCTCAAATGGTGGGTCATCTTGTGTTAGACCACATCCTAACATACCTTCTCAATCCCAGCCTGTTAAATCTTTTCCGGCTTCTCATCCTATGAACTATTTTCCATCCAACTCGTATAATACAAATTCTCCTTATTATCCACCTAATTCTCTCCCATTAACAAGTAGCCCAATGACTCCTAATTGTCAACCAACAACATTTAATTTTCCTCTGCACCATGGTCCCCAAGGTGTGAGTTTTATGAATTCATCTTCACATGGTTCCTCGCCTACTAATAAAACTAGCACTCCAGCAGGGATTACATCTATGACCATTAAGCCTAATGGTACAACTTCTATAGTGGACTCCTCCTTGTCGAATTCCTGTATTGCTGATGTTCAAAATGGAGAATCCCCTGGTTCAACAATATCTTGTGATGTTAGCTCCTCTGTGCTGCAAAAAGGATCAGAAACCTGTTCAGAAGTTTCTCCACAACAATCTAAGTTTTCTAGTGATTTTGTCACAAATGTGTCTAATAATGAAGGTGGAAGGGAATCTCTCGCTATCTCCAACTCTTTGAAGGATAAAAAACCAGGGAAGAAAGATCAAATAACACAAAATCAGGTTTCTGTACTATCTCCCACAATGGACTCTATACGTTCTGGAGTTGTTGATCAAAATATATCTGATATTGGAGTACCCGATGCTTTAGGAACTAAAAAAAATTATTCTGCAGCAATTACTATTGAAGATATTCCAGGATCTGATACAATTTCAACTGGTGTTGAAGTGGAGACCAATGGGTCTGTAGACGCTTCTGCTTATGTTTCAGTGGAAGGATGTGGTGCACAAACTATTGACAAAGTTCACAATCAGATGCCTGATAAGACATATAAATTAGTTGAAGGAAACTTTGGCTCATCAGATCTGCAGTCTACTGATCTTCCAAAAACAACACTAAAGCATTTTAAGAACGATTCAGAGAATGTTGATGTTGAGTCAGGTACCAAGGATAGACCAATTATAGAACCAAATAAGGTGAAAAACCAATCTAAAGGAAAGAAGAAGAGAAGAGAGATACTTCAGAAAGCAGATGCCGCTGGGTCAACTTCTGATCTTTATAATGCATACAAGGGACCTGGGGAAAAGAGAGATGTCTTAAGTTCTGAGAGCAAGGAAAGTGTTACTAGTCCTCTAAGCTTGAAACAATTTGATGTTGGTCAGTCTGATATTAAAGCCAGTGAGAAATGTGATCATAATAAAGTTGAGCTTGATGATTGGGAGGATGTTGCTGACATGTCTACCCCTAAACTGGAGGTTCATGACATATCTCAAAAAGTAGGTGAAGGACATGGAAGTACAACCAAAAAATATTCACGTGATTTCCTTCTGAAATTTGTAGAGCAGTGCATTGATCTTCCTGAAGGTTTTGAAATCACTGCAGACATTGGAGCTTTGATGAATGCCAATATTGGCGGCTCTCATATTTTTGAGCGTGATTCACATCCTAATCCTGGAAGAGCTGTAGGTGGGTTGTCTCGGATGGATCGTCGTGGCGATGTGATTATGGAGGACGATAGATGGAACAGAGTTTCTGGTTCTTTTCGTTCTGGACGTGGTCCAGAAGGCACCGGAGGAAATTCAGGATTTCGATATGGCCATGGAGGCAACTTTGGTGTTTTAAGGAATCCTCGTGCACAAACACCTCTACAATACGGTGGAGGGATCCTTTTTGGGCCAATGCAATCTGGGGGAAATCAAGGTGGAAGAAATATCCCTAATGGGGAGAGATGGCAGCGATCTGCTAGCTTCCAGCAGAGGGGTTTAATTCCTTCTCCAAACCAAACTCCTTTACAAATAATGCACAAAGCTGAGAATAAGTACGAAGTGGGTAAAGTGACAGATGTGGAAGAGGTAAAACAGAGGCAGTTGAAAGCTATCTTAAACAAACTAACACCACAAAATTTTGACAAACTCTTTGAAAAGGTGAAAGAAGTTAATATTGACAATGCAATCACCCTCATCGGTGTCATTTCACAAATATTTGAGAAAGCTCTTATGGAACCTACCTTTTGTGAAATGTATGCCAACTTTTGTTTACATTTGGCTTCTGAGTTGCCTGATTTTAGTGAGGACAATGAAAAAATAACTTTTAAAAGGTTATTATTGAACAAGTGCCAAGAGGAATTTGAGAGGGGTGAAAGGGAAGAAGAAGAAGCAAATAAGGCTGATGAGGGTGAGGTTAAGCAGTCTACTGAGGAAAGGGGAGAAAGAAGAGTTAAGGCAAGAAGACGAATGTTGGGAAACATTAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCATGAGTGTATCAAGAAGTTACTGGGTCAATATCAAGATCCAGATGAAGAAAACATTGAAGCTTTGTGCAAGCTAATGAGTACTATTGGGGAGATGATTGACCATCCAAAAGCCAAGGAACATATGGATGCATATTTTGAAAGGATGAAGTTATTATCAATCAACATGAATTTATCTTCTAGGGTGAGGTTCATGTTGAAGGATGCCATTGATTTGAGAAAGAATAAATGGCAACAAAGGAGGAAAGTAGAAGGTCCCAAAAAGATTGAGGAGGTACATAGGGATGCTGCTCAGGAAAGGCAATCCCATGCTGGTAGGTCAAATCGTGGTCCTGGTAACAATCAATCAAGTAGAAGGAATCCCATTGATTTTAGTCCAAGAGTGTCGTCTTCTAATTCTCAAATGGGTGGATTATGTGGTCTTCCAACTCAAGCACGTGGCTATGGTGGCTCTCAGGATGCTCAATTTGAAGAACAACAATCTTATGAAGCTAAGACTTTGTCAGTTCCTTTGCCTCAAAGATCTTTAGGAGATGACTCTATAACCTTGGTACCTCAAGGTGGTCTTGCTAGGGGAATGTCTATGAGAGGATCAACCACAATTTCCAATCTTCCAATATCTGATGTGGTTCCTGTGCCTAGAGACCCTCATATAATGACTGCAGGTCTTAATGGTCAGAGTAATTCATCAGAGCGCACACAATATAACTCAATGGAGGATCTTGGGTCAAGACGTGGTACTAACAGGTCTTTAGGTCCATCTACTCATGATCAATCAATTGCCCCTGAGCATAATGTAAACCATGGTAACAGAAACTTGAAGAGTGTTTCACCTGCTGCTCAATTGCAAGGATCCATAATCTCTCAGAATTCTTATTCAGATAAGATTGTGTCAGAAGAAGAACTGAGAGACATGTCCTTGTCAGCCATAAGAGAATACTACAGTGCTAGAGATGAGAAAGAACTTGTTTTGTGTATCAAAGATTTGAACTCTCCAAGCTTTTATCCTTCTATGGTTTCTCTCTGGGTCACAGATTCATTTGAGAGAAAAGACACAGAAAGAGATCTTCTTGCCAAACTACTTATCAACCTAGTGAAATCTCAACATCACACCTTGAGTCAAGTCCAACTCATCAAAGGGTTTGAATCTGTTCTCTGTACATTGGAGGATGTCGTTAATGATGCCCCTAGAGCAGCTGAGTTTCTTGGCCTAATTTTTGCTAAAGTCATAATAGAGAGAGTAGCTACTTTTACTGAGATTGCACAATTAATACATGATGGTGGAGAAGAGCCTGGTAGTCTCTTAGAAATTGGACTTGCAGGTGATGTTCTTGGAAGCACGTTGGAGGTAATTCAAAATGAAAAGGGTGACGTGCTTCTAAATGAGATTCTTTCAGGAAGCTCTAATTTCCAATTGAAAACTTTCCAGCCACCTAATGCTAAAATATCAAGGAAGTTGGAAAAATTTATTTAG 4827 0.4046 MAVESRRQTIHYPLPEGGQSRLNPSQGNSTESNNASAARNISNGIHGQSHLHGAPDGPITKSSESSAGHKSTGIVPKAETATLPPLISDPVLPTSLAKGDDESKAFPFQFGSIVPGVINGMAIPARTSSAPPSFDKQKPDQALDDSDKSVSSDPIPPVPKQQKSHEKDAGVNEQSNVEIKDNKDSEVSILTSVNQMSKPFVAPVTGISVSTSYHQSQAPLQFGGAKPQIQSHGMTTTSIQMPIPMPLPIGNATQVQQPVFIPGLQPHPMHPQGIMHQGQNISYSPQMGNQLGNMGIGIGCQYPQQKGGKFASPRKTTHVKITHPETHEELRLDKRMDAFSNGGSSCVRPHPNIPSQSQPVKSFPASHPMNYFPSNSYNTNSPYYPPNSLPLTSSPMTPNCQPTTFNFPLHHGPQGVSFMNSSSHGSSPTNKTSTPAGITSMTIKPNGTTSIVDSSLSNSCIADVQNGESPGSTISCDVSSSVLQKGSETCSEVSPQQSKFSSDFVTNVSNNEGGRESLAISNSLKDKKPGKKDQITQNQVSVLSPTMDSIRSGVVDQNISDIGVPDALGTKKNYSAAITIEDIPGSDTISTGVEVETNGSVDASAYVSVEGCGAQTIDKVHNQMPDKTYKLVEGNFGSSDLQSTDLPKTTLKHFKNDSENVDVESGTKDRPIIEPNKVKNQSKGKKKRREILQKADAAGSTSDLYNAYKGPGEKRDVLSSESKESVTSPLSLKQFDVGQSDIKASEKCDHNKVELDDWEDVADMSTPKLEVHDISQKVGEGHGSTTKKYSRDFLLKFVEQCIDLPEGFEITADIGALMNANIGGSHIFERDSHPNPGRAVGGLSRMDRRGDVIMEDDRWNRVSGSFRSGRGPEGTGGNSGFRYGHGGNFGVLRNPRAQTPLQYGGGILFGPMQSGGNQGGRNIPNGERWQRSASFQQRGLIPSPNQTPLQIMHKAENKYEVGKVTDVEEVKQRQLKAILNKLTPQNFDKLFEKVKEVNIDNAITLIGVISQIFEKALMEPTFCEMYANFCLHLASELPDFSEDNEKITFKRLLLNKCQEEFERGEREEEEANKADEGEVKQSTEERGERRVKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQDPDEENIEALCKLMSTIGEMIDHPKAKEHMDAYFERMKLLSINMNLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQERQSHAGRSNRGPGNNQSSRRNPIDFSPRVSSSNSQMGGLCGLPTQARGYGGSQDAQFEEQQSYEAKTLSVPLPQRSLGDDSITLVPQGGLARGMSMRGSTTISNLPISDVVPVPRDPHIMTAGLNGQSNSSERTQYNSMEDLGSRRGTNRSLGPSTHDQSIAPEHNVNHGNRNLKSVSPAAQLQGSIISQNSYSDKIVSEEELRDMSLSAIREYYSARDEKELVLCIKDLNSPSFYPSMVSLWVTDSFERKDTERDLLAKLLINLVKSQHHTLSQVQLIKGFESVLCTLEDVVNDAPRAAEFLGLIFAKVIIERVATFTEIAQLIHDGGEEPGSLLEIGLAGDVLGSTLEVIQNEKGDVLLNEILSGSSNFQLKTFQPPNAKISRKLEKFI 1608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 702 729 - -
Vium3494g00007 1608 Coils Coil 1054 1074 - -
Vium3494g00007 1608 SUPERFAMILY ARM repeat 968 1196 IPR016024 -
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 1064 1090 - -
Vium3494g00007 1608 Gene3D - 1411 1608 - -
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 657 680 - -
Vium3494g00007 1608 Gene3D - 972 1207 - -
Vium3494g00007 1608 ProSiteProfiles MI domain profile. 1419 1543 IPR003891 -
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 19 47 - -
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 411 445 - -
Vium3494g00007 1608 FunFam Eukaryotic translation initiation factor 4G 972 1207 - -
Vium3494g00007 1608 SMART ma3_7 1420 1534 IPR003891 -
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 1194 1277 - -
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 1358 1390 - -
Vium3494g00007 1608 SUPERFAMILY ARM repeat 1415 1606 IPR016024 -
Vium3494g00007 1608 Pfam MA3 domain 1425 1531 IPR003891 -
Vium3494g00007 1608 SMART if4_15 972 1194 IPR003890 GO:0003723|GO:0005515
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 160 183 - -
Vium3494g00007 1608 Pfam MIF4G domain 972 1194 IPR003890 GO:0003723|GO:0005515
Vium3494g00007 1608 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 282 1607 IPR045208 GO:0003743
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 124 183 - -
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 1194 1220 - -
Vium3494g00007 1608 FunFam Eukaryotic translation initiation factor 4G 1413 1607 - -
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 1221 1257 - -
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 657 688 - -
Vium3494g00007 1608 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3494g00007 Vium-Chr3494 84676 94327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3494g00007 46 1607 Eukaryotic Initiation Factors Gene Family AT3G60240 45.433 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3494g00007 K03260 - gmx:100798562 2342