Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3494g00006 ATGTCCTTCAATCAATCAAAGGTGGAAAAGAACGACGTCGTTTACAGAAGAAACGGACGATCATCCACCTTTAACCAGCAAAGAGGTTCCTACGGCAAAGCTGCTGGCGATGGCGGTGGAATCGCGCCGTCAAACAATTCATTATCCACTGCCCGAAGTTTTAACAAGAAGTCTAATAATGCACAAGGTGGACAATCTAGGCTAAATCCTTCCCAGGGAAATTCAACAGAATCAAATAATGCATCTGCTGCTCGGAACATTAGTAATGGTATCCATGGACAGTCCCACTTACATGGTGCACCAGATGGGCCAATTACAAAGTCATCTGAATCATCAGCTGGGCATAAGAGCACTGGAATTGTTCCAAAGGCTGAAACTGCTACATTGCCCCCTTTAATTTCTGATCCAGTACTTCCCACAAGCCTTGCTAAGGGAGATGATGAGTCTAAGGCATTCCCTTTTCAATTTGGATCCATTGTTCCTGGCGTCATTAATGGGATGGCAATTCCTGCTCGTACAAGTTCAGCTCCTCCTAGTTTTGATAAGCAGAAGCCTGATCAGGCTCTTGATGACTCTGACAAATCTGTGTCTTCGGATCCAATTCCTCCTGTTCCAAAGCAGCAGAAATCACACGAGAAAGATGCTGGTGTCAATGAGCAATCTAACGTTGAGATTAAGGACAACAAGGATTCTGAGGTGTCAATTTTAACCTCAGTAAATCAGATGTCAAAACCCTTTGTTGCTCCTGTAACTGGGATTTCAGTCTCAACTTCATATCACCAATCACAGGCTCCTTTACAGTTTGGAGGTGCTAAACCACAGATTCAATCTCATGGCATGACAACAACGTCCATCCAAATGCCTATACCGATGCCTTTACCAATTGGTAATGCTACACAAGTGCAACAGCCGGTTTTTATTCCAGGTCTTCAACCTCATCCAATGCATCCTCAAGGGATCATGCATCAAGGCCAAAACATTAGTTATTCTCCTCAAATGGGTAATCAATTAGGCAACATGGGCATTGGCATAGGTTGTCAATATCCACAGCAGAAAGGAGGAAAATTTGCAAGTCCTCGGAAAACTACCCATGTAAAGATAACTCATCCTGAGACACATGAAGAGTTAAGACTTGATAAAAGGATGGATGCATTCTCAAATGGTGGGTCATCTTGTGTTAGACCACATCCTAACATACCTTCTCAATCCCAGCCTGTTAAATCTTTTCCGGCTTCTCATCCTATGAACTATTTTCCATCCAACTCGTATAATACAAATTCTCCTTATTATCCACCTAATTCTCTCCCATTAACAAGTAGCCCAATGACTCCTAATTGTCAACCAACAACATTTAATTTTCCTCTGCACCATGGTCCCCAAGGTGTGAGTTTTATGAATTCATCTTCACATGGTTCCTCGCCTACTAATAAAACTAGCACTCCAGCAGGGATTACATCTATGACCATTAAGCCTAATGGTACAACTTCTATAGTGGACTCCTCCTTGTCGAATTCCTGTATTGCTGATGTTCAAAATGGAGAATCCCCTGGTTCAACAATATCTTGTGATGTTAGCTCCTCTGTGCTGCAAAAAGGATCAGAAACCTGTTCAGAAGTTTCTCCACAACAATCTAAGTTTTCTAGTGATTTTGTCACAAATGTGTCTAATAATGAAGGTGGAAGGGAATCTCTCGCTATCTCCAACTCTTTGAAGGATAAAAAACCAGGGAAGAAAGATCAAATAACACAAAATCAGGTTTCTGTACTATCTCCCACAATGGACTCTATACGTTCTGGAGTTGTTGATCAAAATATATCTGATATTGGAGTACCCGATGCTTTAGGAACTAAAAAAAATTATTCTGCAGCAATTACTATTGAAGATATTCCAGGATCTGATACAATTTCAACTGGTGTTGAAGTGGAGACCAATGGGTCTGTAGACGCTTCTGCTTATGTTTCAGTGGAAGGATGTGGTGCACAAACTATTGACAAAGTTCACAATCAGATGCCTGATAAGACATATAAATTAGTTGAAGGAAACTTTGGCTCATCAGATCTGCAGTCTACTGATCTTCCAAAAACAACACTAAAGCATTTTAAGAACGATTCAGAGAATGTTGATGTTGAGTCAGGTACCAAGGATAGACCAATTATAGAACCAAATAAGGTGAAAAACCAATCTAAAGGAAAGAAGAAGAGAAGAGAGATACTTCAGAAAGCAGATGCCGCTGGGTCAACTTCTGATCTTTATAATGCATACAAGGGACCTGGGGAAAAGAGAGATGTCTTAAGTTCTGAGAGCAAGGAAAGTGTTACTAGTCCTCTAAGCTTGAAACAATTTGATGTTGGTCAGTCTGATATTAAAGCCAGTGAGAAATGTGATCATAATAAAGTTGAGCTTGATGATTGGGAGGATGTTGCTGACATGTCTACCCCTAAACTGGAGGTTCATGACATATCTCAAAAAGTAGGTGAAGGACATGGAAGTACAACCAAAAAATATTCACGTGATTTCCTTCTGAAATTTGTAGAGCAGTGCATTGATCTTCCTGAAGGTTTTGAAATCACTGCAGACATTGGAGCTTTGATGAATGCCAATATTGGCGGCTCTCATATTTTTGAGCGTGATTCACATCCTAATCCTGGAAGAGCTGTAGGTGGGTTGTCTCGGATGGATCGTCGTGGCGATGTGATTATGGAGGACGATAGATGGAACAGAGTTTCTGGTTCTTTTCGTTCTGGACGTGGTCCAGAAGGCACCGGAGGAAATTCAGGATTTCGATATGGCCATGGAGGCAACTTTGGTGTTTTAAGGAATCCTCGTGCACAAACACCTCTACAATACGGTGGAGGGATCCTTTTTGGGCCAATGCAATCTGGGGGAAATCAAGGTGGAAGAAATATCCCTAATGGGGAGAGATGGCAGCGATCTGCTAGCTTCCAGCAGAGGGGTTTAATTCCTTCTCCAAACCAAACTCCTTTACAAATAATGCACAAAGCTGAGAATAAGTACGAAGTGGGTAAAGTGACAGATGTGGAAGAGGTAAAACAGAGGCAGTTGAAAGCTATCTTAAACAAACTAACACCACAAAATTTTGACAAACTCTTTGAAAAGGTGAAAGAAGTTAATATTGACAATGCAATCACCCTCATCGGTGTCATTTCACAAATATTTGAGAAAGCTCTTATGGAACCTACCTTTTGTGAAATGTATGCCAACTTTTGTTTACATTTGGCTTCTGAGTTGCCTGATTTTAGTGAGGACAATGAAAAAATAACTTTTAAAAGGTTATTATTGAACAAGTGCCAAGAGGAATTTGAGAGGGGTGAAAGGGAAGAAGAAGAAGCAAATAAGGCTGATGAGGGTGAGGTTAAGCAGTCTACTGAGGAAAGGGGAGAAAGAAGAGTTAAGGCAAGAAGACGAATGTTGGGAAACATTAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCATGAGTGTATCAAGAAGTTACTGGGTCAATATCAAGATCCAGATGAAGAAAACATTGAAGCTTTGTGCAAGCTAATGAGTACTATTGGGGAGATGATTGACCATCCAAAAGCCAAGGAACATATGGATGCATATTTTGAAAGGATGAAGTTATTATCAATCAACATGAATTTATCTTCTAGGGTGAGGTTCATGTTGAAGGATGCCATTGATTTGAGAAAGAATAAATGGCAACAAAGGAGGAAAGTAGAAGGTCCCAAAAAGATTGAGGAGGTACATAGGGATGCTGCTCAGGAAAGGCAATCCCATGCTGGTAGGTCAAATCGTGGTCCTGGTAACAATCAATCAAGTAGAAGGAATCCCATTGATTTTAGTCCAAGAGTGTCGTCTTCTAATTCTCAAATGGGTGGATTATGTGGTCTTCCAACTCAAGCACGTGGCTATGGTGGCTCTCAGGATGCTCAATTTGAAGAACAACAATCTTATGAAGCTAAGACTTTGTCAGTTCCTTTGCCTCAAAGATCTTTAGGAGATGACTCTATAACCTTGGTACCTCAAGGTGGTCTTGCTAGGGGAATGTCTATGAGAGGATCAACCACAATTTCCAATCTTCCAATATCTGATGTGGTTCCTGTGCCTAGAGACCCTCATATAATGACTGCAGGTCTTAATGGTCAGAGTAATTCATCAGAGCGCACACAATATAACTCAATGGAGGATCTTGGGTCAAGACGTGGTACTAACAGGTCTTTAGGTCCATCTACTCATGATCAATCAATTGCCCCTGAGCATAATGTAAACCATGGTAACAGAAACTTGAAGAGTGTTTCACCTGCTGCTCAATTGCAAGGATCCATAATCTCTCAGAATTCTTATTCAGATAAGATTGTGTCAGAAGAAGAACTGAGAGACATGTCCTTGTCAGCCATAAGAGAATACTACAGTGCTAGAGATGAGAAAGAACTTGTTTTGTGTATCAAAGATTTGAACTCTCCAAGCTTTTATCCTTCTATGGTTTCTCTCTGGGTCACAGATTCATTTGAGAGAAAAGACACAGAAAGAGATCTTCTTGCCAAACTACTTATCAACCTAGTGAAATCTCAACATCACACCTTGAGTCAAGTCCAACTCATCAAAGGGTTTGAATCTGTTCTCTGTACATTGGAGGATGTCGTTAATGATGCCCCTAGAGCAGCTGAGTTTCTTGGCCTAATTTTTGCTAAAGTCATAATAGAGAGAGTAGCTACTTTTACTGAGATTGCACAATTAATACATGATGGTGGAGAAGAGCCTGGTAGTCTCTTAGAAATTGGACTTGCAGGTGATGTTCTTGGAAGCACGTTGGAGGTAATTCAAAATGAAAAGGGTGACGTGCTTCTAAATGAGATTCTTTCAGGAAGCTCTAATTTCCAATTGAAAACTTTCCAGCCACCTAATGCTAAAATATCAAGGAAGTTGGAAAAATTTATTTAG 4965 0.4052 MSFNQSKVEKNDVVYRRNGRSSTFNQQRGSYGKAAGDGGGIAPSNNSLSTARSFNKKSNNAQGGQSRLNPSQGNSTESNNASAARNISNGIHGQSHLHGAPDGPITKSSESSAGHKSTGIVPKAETATLPPLISDPVLPTSLAKGDDESKAFPFQFGSIVPGVINGMAIPARTSSAPPSFDKQKPDQALDDSDKSVSSDPIPPVPKQQKSHEKDAGVNEQSNVEIKDNKDSEVSILTSVNQMSKPFVAPVTGISVSTSYHQSQAPLQFGGAKPQIQSHGMTTTSIQMPIPMPLPIGNATQVQQPVFIPGLQPHPMHPQGIMHQGQNISYSPQMGNQLGNMGIGIGCQYPQQKGGKFASPRKTTHVKITHPETHEELRLDKRMDAFSNGGSSCVRPHPNIPSQSQPVKSFPASHPMNYFPSNSYNTNSPYYPPNSLPLTSSPMTPNCQPTTFNFPLHHGPQGVSFMNSSSHGSSPTNKTSTPAGITSMTIKPNGTTSIVDSSLSNSCIADVQNGESPGSTISCDVSSSVLQKGSETCSEVSPQQSKFSSDFVTNVSNNEGGRESLAISNSLKDKKPGKKDQITQNQVSVLSPTMDSIRSGVVDQNISDIGVPDALGTKKNYSAAITIEDIPGSDTISTGVEVETNGSVDASAYVSVEGCGAQTIDKVHNQMPDKTYKLVEGNFGSSDLQSTDLPKTTLKHFKNDSENVDVESGTKDRPIIEPNKVKNQSKGKKKRREILQKADAAGSTSDLYNAYKGPGEKRDVLSSESKESVTSPLSLKQFDVGQSDIKASEKCDHNKVELDDWEDVADMSTPKLEVHDISQKVGEGHGSTTKKYSRDFLLKFVEQCIDLPEGFEITADIGALMNANIGGSHIFERDSHPNPGRAVGGLSRMDRRGDVIMEDDRWNRVSGSFRSGRGPEGTGGNSGFRYGHGGNFGVLRNPRAQTPLQYGGGILFGPMQSGGNQGGRNIPNGERWQRSASFQQRGLIPSPNQTPLQIMHKAENKYEVGKVTDVEEVKQRQLKAILNKLTPQNFDKLFEKVKEVNIDNAITLIGVISQIFEKALMEPTFCEMYANFCLHLASELPDFSEDNEKITFKRLLLNKCQEEFERGEREEEEANKADEGEVKQSTEERGERRVKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQDPDEENIEALCKLMSTIGEMIDHPKAKEHMDAYFERMKLLSINMNLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQERQSHAGRSNRGPGNNQSSRRNPIDFSPRVSSSNSQMGGLCGLPTQARGYGGSQDAQFEEQQSYEAKTLSVPLPQRSLGDDSITLVPQGGLARGMSMRGSTTISNLPISDVVPVPRDPHIMTAGLNGQSNSSERTQYNSMEDLGSRRGTNRSLGPSTHDQSIAPEHNVNHGNRNLKSVSPAAQLQGSIISQNSYSDKIVSEEELRDMSLSAIREYYSARDEKELVLCIKDLNSPSFYPSMVSLWVTDSFERKDTERDLLAKLLINLVKSQHHTLSQVQLIKGFESVLCTLEDVVNDAPRAAEFLGLIFAKVIIERVATFTEIAQLIHDGGEEPGSLLEIGLAGDVLGSTLEVIQNEKGDVLLNEILSGSSNFQLKTFQPPNAKISRKLEKFI 1654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3494g00006 1654 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 328 1653 IPR045208 GO:0003743
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 1240 1266 - -
Vium3494g00006 1654 SUPERFAMILY ARM repeat 1014 1242 IPR016024 -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 1267 1303 - -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 42 93 - -
Vium3494g00006 1654 SUPERFAMILY ARM repeat 1461 1652 IPR016024 -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 1404 1436 - -
Vium3494g00006 1654 SMART if4_15 1018 1240 IPR003890 GO:0003723|GO:0005515
Vium3494g00006 1654 Gene3D - 1457 1654 - -
Vium3494g00006 1654 FunFam Eukaryotic translation initiation factor 4G 1018 1253 - -
Vium3494g00006 1654 Pfam MIF4G domain 1018 1240 IPR003890 GO:0003723|GO:0005515
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 206 229 - -
Vium3494g00006 1654 Gene3D - 1018 1253 - -
Vium3494g00006 1654 Coils Coil 1100 1120 - -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 703 726 - -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 1110 1136 - -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 1240 1323 - -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 1 145 - -
Vium3494g00006 1654 ProSiteProfiles MI domain profile. 1465 1589 IPR003891 -
Vium3494g00006 1654 Pfam MA3 domain 1471 1577 IPR003891 -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 170 229 - -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 457 491 - -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 748 775 - -
Vium3494g00006 1654 MobiDBLite consensus disorder prediction 703 734 - -
Vium3494g00006 1654 SMART ma3_7 1466 1580 IPR003891 -
Vium3494g00006 1654 FunFam Eukaryotic translation initiation factor 4G 1459 1653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3494g00006 Vium-Chr3494 84676 94327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3494g00006 1 1653 Eukaryotic Initiation Factors Gene Family AT3G60240 44.506 0.0 1219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3494g00006 K03260 - gmx:100798562 2420.58