Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3494g00005 ATGCAGCTTACACACCTGTGCCTTGTCATGCCCTCAGACTATGATAAACTAGAGCCACTTCATGCAACCCCACCAAAACATAAAGGGACACAGAAAAAAGTTAAGGCCAAAAAGGACTTCAAAGGGGCATGTGGAGGCCATGTTGTTGCTACCCTTCAAGGTTCCTTAACGAGGTTGTGTGAGTCAAAGTGGTGGAGTCTATGCCAAGATGGTGCAAGAGAAAGCAAGCAGATCAAGGCTTCATCTTGTGTGTTTCATGATATTGAGGGTGTGCAGCTCTCTTCAAAGATTGGAAGGGACAGCAACAATCCAAGGATTTTCAGCTACGCTGAGCTGTACATAGGGTCAAGGGGTTTTTCTGAGGAGGAGGTTCTTGGAAGTGGAGGTTTTGGCAAAGTGTACAAAGCTGTTATGCCTAGTGATGGAACAGTGGTGGCTGTGAAGTGTTGCTTGGCAGGGAAAGGTGGCCAGTTTGAGAAGACTTTTGCGGCAGAACTAGCAGCAGTGGCACACCTTCGCCACAAGAACCTTGTTCCCTTGAGGGGTTGGTGTGTTTTTGAGGATCAACTTTACCTTGTGTATGACTACATGCCTAATCTCAGCCTTGACCGGGTGCTGTTTCGGAAGAACTTGAAGGAGGAGCCACTTGGGTGGGTGAGGCGTGGCAAAATTGTGAAGGGTTTGGCATGTGCGTTGCACTATCTTCATGAGCAGTTGGAGACTCAGATCATTCACAGGGATGTGAAGACCAGCAATGTGATGCTTGATTCCCACTACAATGCTAGGTTGGGGGACTTTGGCTTGGCAAGGTGGCTTGAGCATGAGCTTGAGTACGAGTATGAGACTAGGAAAGAAGCATCAACATCAAGCAAGTTTGAGAATTTCAGGTTGAGTGAGACCACAAGGATTGGTGGCACAATTGGGTACTTGCCCCCTGAGAGCTTCCAGAGAAGGAGTGTTGCAACCTCAAAATCTGATGTTTTCAGCTTTGGAATCGTTGTGTTAGAGGTGGTGTCTGGAAGGAGGGCCATCGATCTCACATACCCTGATGAGAAAATCATCTTGGTTGATTGGATCAGAAGGCTCAGTGATGAAGGGAGAGTCGTTGATGCTGGGGATACAAGGCTGATATACGGTTCCTACAAGGCTTTTGAGATGGAGCATTTGATTCACATAGGCCTTTTGTGCACACTCCATGACCCTTTGTTGAGACCAAGCATGAAGTGGATTGTAGAAGCACTTTCTGATATGTCAAATAAGTTGCCAACACTCCCTTCGTTTCACTCCCATCCTATGTACATCTCTTTGTCTTCTTCATCTGAGACTAGTCCAAGCAGCTCAAAAGGGACTGGCTCAGGCACAGGAACAGAAAGTTCTAGCAATCATTCTAGTTCCATTTCAAAATATGTCACTGCCACAGGAGATACCATATATGTAACAGCTGAAGCTGAACAGAGAAACGGTGGAACTAACTCTTGTAAGAGTAGCAAGAGAACGATGCATAAGCAGACATCATTTTCTGTGGTTCAAACACCTAGGGAGATACCATTCAAGGAGATTGTTTCAGCCACAGAGAACTTCTCAGAGTCCAAAAGGGTGGCCGAGTTAGACTTTGGAACTGCTTACCATGGCATCCTAGATGGCCACTGCCATGTCATGGTGAAACGCCTTGGCTTGAAGACATGCCCTGCACTGCGCCAAAGATTTTCCAATGAGCTAAGAAACCTTGCAAAACTTCGCCACAGGAACTTGGTGCAGCTCAGAGGATGGTGCACTGAGCAAGGAGAGATGCTTGTGGTGTATGATTACTCAGCCAGAAGATTTCTCAGCCACCAACTTCACCATCATATCAATGGTACTAAAAAGGGTTATTCTGTTCTGAAATGGCATCATAGGTATAACATAGCGAAATCACTTGCATCTGCACTTCTCTATCTGCATGAGGAATGGGATGAACAGGTCATTCACAGGAACATAACCTCTTCAGCAGTGACTCTTGAACCTGACATGACCCCAAGACTAGGTAGTTTTGCTCTGGCTGAGTTTCTTTCAAGGAATGAGCATGGCCATCATGTGATCACCACCAGGAACAAGTCTGTTTGTGGGATTTACGGCTACATGTCACCAGAATATGTGGAATCAGGAGAAGCAACGGTGGCTGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAGATTGTGAGTGGACTTAAGGCTGTGGATTTTAGGCAACCTGAGGTGCTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGAAAAAGATCACTTGAGGCACTAGCAGATACAAGACTAAATGGAGAATACAATCACAAGGAGCTAATGAGATTGGTGAGGTTAGGAGTTGCATGCACCCGTTCTGACCCAAAACTAAGACCAAGCACAAGACAGATAGTGAGCATCCTTGATGGAAATGAGAAATTAATCATGGGGGAGAACATGGAGAGCAGGGAAGATTGGAGAGAAAGAAACGCTTGTTCTCTGTCTCTGGTCAAGAGAATCCAAGCTCTAGGAATACAATGA 2541 0.4577 MQLTHLCLVMPSDYDKLEPLHATPPKHKGTQKKVKAKKDFKGACGGHVVATLQGSLTRLCESKWWSLCQDGARESKQIKASSCVFHDIEGVQLSSKIGRDSNNPRIFSYAELYIGSRGFSEEEVLGSGGFGKVYKAVMPSDGTVVAVKCCLAGKGGQFEKTFAAELAAVAHLRHKNLVPLRGWCVFEDQLYLVYDYMPNLSLDRVLFRKNLKEEPLGWVRRGKIVKGLACALHYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHELEYEYETRKEASTSSKFENFRLSETTRIGGTIGYLPPESFQRRSVATSKSDVFSFGIVVLEVVSGRRAIDLTYPDEKIILVDWIRRLSDEGRVVDAGDTRLIYGSYKAFEMEHLIHIGLLCTLHDPLLRPSMKWIVEALSDMSNKLPTLPSFHSHPMYISLSSSSETSPSSSKGTGSGTGTESSSNHSSSISKYVTATGDTIYVTAEAEQRNGGTNSCKSSKRTMHKQTSFSVVQTPREIPFKEIVSATENFSESKRVAELDFGTAYHGILDGHCHVMVKRLGLKTCPALRQRFSNELRNLAKLRHRNLVQLRGWCTEQGEMLVVYDYSARRFLSHQLHHHINGTKKGYSVLKWHHRYNIAKSLASALLYLHEEWDEQVIHRNITSSAVTLEPDMTPRLGSFALAEFLSRNEHGHHVITTRNKSVCGIYGYMSPEYVESGEATVAADVYSFGVVVLEIVSGLKAVDFRQPEVLLVKKVHEFEMRKRSLEALADTRLNGEYNHKELMRLVRLGVACTRSDPKLRPSTRQIVSILDGNEKLIMGENMESREDWRERNACSLSLVKRIQALGIQ 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3494g00005 846 FunFam Receptor like protein kinase S.2 487 603 - -
Vium3494g00005 846 MobiDBLite consensus disorder prediction 438 466 - -
Vium3494g00005 846 Gene3D Phosphorylase Kinase; domain 1 91 196 - -
Vium3494g00005 846 ProSiteProfiles Protein kinase domain profile. 119 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3494g00005 846 SMART serkin_6 119 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3494g00005 846 Gene3D Phosphorylase Kinase; domain 1 488 603 - -
Vium3494g00005 846 ProSiteProfiles Protein kinase domain profile. 527 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3494g00005 846 SUPERFAMILY Protein kinase-like (PK-like) 102 442 IPR011009 -
Vium3494g00005 846 PANTHER - 82 416 - -
Vium3494g00005 846 FunFam Receptor like protein kinase S.2 605 831 - -
Vium3494g00005 846 Pfam Protein tyrosine and serine/threonine kinase 531 808 IPR001245 GO:0004672|GO:0006468
Vium3494g00005 846 Gene3D Transferase(Phosphotransferase) domain 1 610 831 - -
Vium3494g00005 846 FunFam Receptor like protein kinase S.2 197 420 - -
Vium3494g00005 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Vium3494g00005 846 FunFam Receptor like protein kinase S.2 91 196 - -
Vium3494g00005 846 Pfam Protein kinase domain 120 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3494g00005 846 SUPERFAMILY Protein kinase-like (PK-like) 500 808 IPR011009 -
Vium3494g00005 846 ProSitePatterns Protein kinases ATP-binding region signature. 125 154 IPR017441 GO:0005524
Vium3494g00005 846 Gene3D Transferase(Phosphotransferase) domain 1 197 422 - -
Vium3494g00005 846 MobiDBLite consensus disorder prediction 481 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3494g00005 Vium-Chr3494 80650 83455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3494g00005 517 814 Receptor kinase-like Gene Family AT4G02420 35.430 1.47e-52 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium3494g00005 PK_Tyr_Ser-Thr 8.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3494g00005 - - gmx:100781955 1462.59