Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3494g00003 ATGGACCAAATGGATGATGACTCATGGCAAAAATGGGTTTCGATTTTGGAGGAAAATGATTGGCATACTATAAGTGATTTTGACCTGCACTCTGCTGGAGAAGAATTTAAGAGGGACAGTTCAGTGGTGCCTGCAGAAAAATCATTGAAAGAAAGCAGCACTACCCTTCTAAGCAATTTTCCATCTTTGGAAAAGAACACTGGCTTTGACATGACCAGTCTCACACAACAACATGATTCTCCACGACCAAAGTCTTGTGTTCTGTCGTTTGAGAATTTCACTTCAGTGCCAATTTTTGATAAGAAAACGTGCCAACATCTTGGTGAACACTCAAATCAGACCCAAGAAAAAACCAGAAAACCCCTCAAGAGGGAAAGAAACTCTTCTCAGACACTTGATCACATAATGGCTGAGAGAAAAAGGAGAGAGAATCTCACCAAAATGTTCATTGCCCTTTCTGCTCTTATTCCTGGCTTGAAAAAGGTGGACAAGGTTTCTGTTCTGAACAAGGCCATAGAATACGTGAAGTGTCTTGAGCAGCGTGTGAAAGATTTGGAGAAAGAGAATAAGAAAAGGAAGATAGAATCAAAAGGGTGCTTGAAAGTGAGCAAAAGCAACATGGTTGGATAA 630 0.4048 MDQMDDDSWQKWVSILEENDWHTISDFDLHSAGEEFKRDSSVVPAEKSLKESSTTLLSNFPSLEKNTGFDMTSLTQQHDSPRPKSCVLSFENFTSVPIFDKKTCQHLGEHSNQTQEKTRKPLKRERNSSQTLDHIMAERKRRENLTKMFIALSALIPGLKKVDKVSVLNKAIEYVKCLEQRVKDLEKENKKRKIESKGCLKVSKSNMVG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3494g00003 209 Gene3D - 125 201 IPR036638 GO:0046983
Vium3494g00003 209 MobiDBLite consensus disorder prediction 107 128 - -
Vium3494g00003 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Vium3494g00003 209 Coils Coil 168 195 - -
Vium3494g00003 209 SMART finulus 135 184 IPR011598 GO:0046983
Vium3494g00003 209 Pfam Helix-loop-helix DNA-binding domain 134 179 IPR011598 GO:0046983
Vium3494g00003 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 193 IPR036638 GO:0046983
Vium3494g00003 209 PANTHER BHLH TRANSCRIPTION FACTOR 41 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3494g00003 Vium-Chr3494 54989 56527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3494g00003 85 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.118 1.20e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3494g00003 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3494g00003 - - vum:124834678 415.231