Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3494g00002 ATGGACCAAATGGATGATGACTCATGGCAAAAATGGGTTTCGATTTTGGAGGAAAATGATTGGCATACTTTACGTGATTTTGACCTGAACTCTGCTGGAGAAGAATTTAAGGGGGACAGTTCAGTGGTGCCTGCAGAATATTCATTGAAAGAAAGCAGCACTACCCTTCTAAGCAATTTTCCATCTTTGGAAGAGAACACTGGCTTTGACATGACTAGTTTCACACAACAACATGTTTCTCCACGACCAAAGTCTTGTGTTCTGTCGTTTGAGAATTTCACTTCAGTGCCAATTTTTGATAAGAAAACATGCCAACATCTTGGTGAACACTCAAATCAGACTCAAGAAAAAACCAGAAAACCCCTCAAGAGGGAAAGAAACTCTTCTCAGACACTTGATCACATAATGGCCGAGAGGAAAAGGAGAGAGAATCTCACCAAAATGTTCATTGCCCTTTCTGCTCTTATTCCTGGCTTGAAAAAGGTGGACAAGGTTTCTGTTCTGAACAAGGCCATAGAATACGTGAAGTGTCTTGAACAGCGTGTGAAAGATTTGGAGAAAGAGAATAAGAAAAGGAAGATAGAATCAGAAGGGTGCTTGAAAGTGAGCAAAAGCAACATGGTTGGATACGACTTTTCGTGGATCTCTCATGCTTGTAATGATGGTGACAAAGCTAGCAAGAAATGTTCGAAGGTTGAAGCAAGAGTTGCAGGAAAAGATGTACTTATCAGAGTAACGTGTGAGATGCAAAGGAACATTGTGCAGAACGTAATGGCCAAGCTTGAAGCTCATAATCTCTCTGTTGTTAGCAGCAATGTTTTGCCTTTTGGGAATTCTGCTATCACCATTACCAGCATTGCTGAGATGAACCCTAAATTCACCACGACAGTTGACAACTTTGTGAAAACATTGACTGAGGATTTGTCCAAGTGCTGTAACCTGTAA 945 0.4085 MDQMDDDSWQKWVSILEENDWHTLRDFDLNSAGEEFKGDSSVVPAEYSLKESSTTLLSNFPSLEENTGFDMTSFTQQHVSPRPKSCVLSFENFTSVPIFDKKTCQHLGEHSNQTQEKTRKPLKRERNSSQTLDHIMAERKRRENLTKMFIALSALIPGLKKVDKVSVLNKAIEYVKCLEQRVKDLEKENKKRKIESEGCLKVSKSNMVGYDFSWISHACNDGDKASKKCSKVEARVAGKDVLIRVTCEMQRNIVQNVMAKLEAHNLSVVSSNVLPFGNSAITITSIAEMNPKFTTTVDNFVKTLTEDLSKCCNL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3494g00002 314 Gene3D - 123 201 IPR036638 GO:0046983
Vium3494g00002 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Vium3494g00002 314 MobiDBLite consensus disorder prediction 106 128 - -
Vium3494g00002 314 Coils Coil 168 195 - -
Vium3494g00002 314 SMART finulus 135 184 IPR011598 GO:0046983
Vium3494g00002 314 PANTHER BHLH TRANSCRIPTION FACTOR 54 309 - -
Vium3494g00002 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 194 IPR036638 GO:0046983
Vium3494g00002 314 Pfam Helix-loop-helix DNA-binding domain 134 179 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3494g00002 Vium-Chr3494 41724 44547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3494g00002 11 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.127 1.04e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3494g00002 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3494g00002 - - vun:114166535 458.373