Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3494g00001 ATGGATGAATCATGGGAAAAATGGTTTTCTGATTTAGAAATGGATGATGATGAGATGCGTTTGTTCAACGAACACGACGTGAACTCTCTTGAGGAAGAATTGATGAAGGGAGAGAGTTCAGTGCCTTATGATTCAGATTTTGCTATCAACAACAACAACAACATGGAAAATCTTTCATGTTTGGAAACGAACACGAATTCTGGTTCGGAGAAGAACCATGAATTTTCATCCTTCACTCTCTCTTTCGAGAACTCCACTGTTGTGTCAAATGATGCTGATGAAGCATTCCATGCGAAGCAAAAGAAAAGAAGCACTTTTCAGACGCAGCTGCATATAATGTCTGAGCGGAAGAGGAAGAGGAGAGAGAAAATCAGCACTATGAGGGAAATGGGTGATGATGATGAGTTTCATTTGTTCGTTGAACACGAGATGAACTCTCTCGAGGAAGAATTGATGAAGGAAGAGAGTGGTTCAGGTTTTGGTATCAACAAAAACAACAACAACATGGGCGATGGTTCGTGTTTGAAAAAGAGCACACAACGTGCGAATTCTGGTTCGGAGAAACAGGTATTTTCATCCTGCACTCTCGCTTTTGAAGACTCCACTGTGGTTTCAAATGTTGCTGATGCAGCATTCCATGCAAAGCCTGAAAAGAAAAAAAGCACTTTTCAGACGGAACAGCACATCATGGCCGAGAGGAAGAGGAGAGAGAAAATCAGCACTATGATGATAGAACTTTCAACCATGCTTCCTGGTTTGAAAAAGTTGGACAAGATATCTATCGTTGGAAAAACGATCGATTATGTGAAACATTTACAGAATCGTGTAAATGATTTGCAAGAACAGAAACGTAAGACAGAATCTGTAAAGTGCTGCAAAAACAAGGGATCCAATGTTAATATTTCAGAAAAATTTCCGAAAGTCGATGCAAGTGTTTCAGGTAAAGATGTAAGAATCAGAGTTATTTGTGACAGACGAGAACACATTGTAACAAAGCTATTTTCGAAGCTTGAATCTCACCATCTCTCCATAGTTTGTAGCAGTGTTCTGCCATTGGGAAGTTCTGCTCTAAACATTTCTATCATTTGCCAGGTGGAACATGTCAGCATGGCAATACATGAGTTAGTGAATATTTTAAATGAGGATTTATTGAAATTATATAACTTGCAATAA 1173 0.3896 MDESWEKWFSDLEMDDDEMRLFNEHDVNSLEEELMKGESSVPYDSDFAINNNNNMENLSCLETNTNSGSEKNHEFSSFTLSFENSTVVSNDADEAFHAKQKKRSTFQTQLHIMSERKRKRREKISTMREMGDDDEFHLFVEHEMNSLEEELMKEESGSGFGINKNNNNMGDGSCLKKSTQRANSGSEKQVFSSCTLAFEDSTVVSNVADAAFHAKPEKKKSTFQTEQHIMAERKRREKISTMMIELSTMLPGLKKLDKISIVGKTIDYVKHLQNRVNDLQEQKRKTESVKCCKNKGSNVNISEKFPKVDASVSGKDVRIRVICDRREHIVTKLFSKLESHHLSIVCSSVLPLGSSALNISIICQVEHVSMAIHELVNILNEDLLKLYNLQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3494g00001 390 Pfam Helix-loop-helix DNA-binding domain 226 273 IPR011598 GO:0046983
Vium3494g00001 390 SMART finulus 229 278 IPR011598 GO:0046983
Vium3494g00001 390 Gene3D - 214 288 IPR036638 GO:0046983
Vium3494g00001 390 Coils Coil 269 289 - -
Vium3494g00001 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 272 IPR011598 GO:0046983
Vium3494g00001 390 PANTHER BHLH TRANSCRIPTION FACTOR 18 125 - -
Vium3494g00001 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 284 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3494g00001 Vium-Chr3494 19310 23734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3494g00001 220 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 33.129 6.01e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3494g00001 HLH 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3494g00001 - - vum:124834675 761.911