Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3490g00001 ATGGGTGGCATGTGTTGCAAGCCCTCTGCCATTGAAGACAGTAAGGAGAGTCCAAGGGAGCGTTTATTGAGCAAGGCTGTGTCGGACTTGCGTGTATCTAGGGGAACTTCATCGAGGAGGGAGGAAGTTTTTAGGGTAAAAGATAGATATGATAACAATGAGGGAAGAACGTCATTGATTGATAAGCAAGGGAATGGTTCTGCTAGAGTGCAAGGTGATAGTATTGAAAGAAAGAGGGAGAAAATGGAATATGCTGTTGCTCCACATCCGGGGATTGGTAGTGTTCCCAAAGCCATGGAAGGTGAACAGGTTGCTGCTGGGTGGCCCTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAGGGGATGGCTGCCACGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGAGATCTTGAACAAAAGAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGCAGGCTTGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTCACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTGAAGTTTACTGAAGCTCAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTGCACCGTGACATTAAGGGTTCTAATCTTTTGATTGACAACAATGGGATATTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCCAATCAAGCTCAGCCATTGACAAGCCGAGTTGTCACTCTTTGGTATAGGCCACCTGAGCTTTTGCTTGGAGCCACTTATTATGGCACTGCTGTAGACTTATGGAGTACAGGTTGCATACTTGCTGAGCTGTATGCTGGGAAGCCTATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGACTATTGGAGAAAATCAAAGTTGCCTCATGCAACAATATTTAAGCCTCAACAGCCCTATAGACGATGTGTTTCTGAAACATTCAAGGACTTTCCTACACCTGCAATAGACTTGATAGAGACTCTTTTGTCCATAGATCCTGCTGATCGTGGAACTTCAGCATCTGCTTTGATTAGTGAGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAGGTGCGGGATGAAGAAGCTAGAAGACAAGGAGGAGCAGGAGTCAAGGGCCAGAGGCATGATCTTGAGAGAAAAGGCACAAGAGAATCACGAGCAATTCCTGCACCTGATGCCAATGCTGAACTGGTCCTGTCAATGCAGAAGAGGCAAGGGCAGGCTAATTCTCAGAGCAGGAGTGAGAAGTTTAACCCTCATCCTGAAGAAGTTGCTTCTGGATTTCCCATCGACCCCCCTAGACCATCACAAGCTGCAGGAGTGAGTGTGGATCCCCCTGTTCATCAACACAAAAGAGCTTCCCATTCAGGTCCATTGACACACCGTGCCGCATGGGCCAAAGCTGGGAAGAACCAGGAAGATGCTCCAAAGGTTTCAATGGGGGGCGACTTATCAACAATATCAGGCTTAGTTGCGGCAAGGAGGAGTATGCTCTCTGATGATCGCAGAGAAAGGTCTGGATCATCACAAGCAGATGCCCAAAAACTAATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCCTCTGAGTCAATGACGCAACAGGATCAGAAAAATAATCATGCACATGCTCCTCAAAAGGAAGAAGGAAGAGCCAGCAGCAACAAAGACTCAAGTCTTGTTGGTTATGGCTCGAAGGGTCATAAAATTCATTATTCTGGGCCTCTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAGGATCATGACCGGCAAATCCAAGAGGCGGTTCGAAGATCAAGATTAGACAAGGCAAAGATGAGAAGACTCCAAGCTGAGGGGAACCAGATAAGCAATTCATTATTTGTTTCTGGTCGTTGA 2130 0.4559 MGGMCCKPSAIEDSKESPRERLLSKAVSDLRVSRGTSSRREEVFRVKDRYDNNEGRTSLIDKQGNGSARVQGDSIERKREKMEYAVAPHPGIGSVPKAMEGEQVAAGWPSWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNQAQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVSETFKDFPTPAIDLIETLLSIDPADRGTSASALISEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGGAGVKGQRHDLERKGTRESRAIPAPDANAELVLSMQKRQGQANSQSRSEKFNPHPEEVASGFPIDPPRPSQAAGVSVDPPVHQHKRASHSGPLTHRAAWAKAGKNQEDAPKVSMGGDLSTISGLVAARRSMLSDDRRERSGSSQADAQKLISRFPGSFKEASESMTQQDQKNNHAHAPQKEEGRASSNKDSSLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRSRLDKAKMRRLQAEGNQISNSLFVSGR 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3490g00001 709 CDD STKc_CDK9_like 131 415 - -
Vium3490g00001 709 MobiDBLite consensus disorder prediction 608 648 - -
Vium3490g00001 709 MobiDBLite consensus disorder prediction 483 498 - -
Vium3490g00001 709 FunFam probable serine/threonine-protein kinase At1g54610 214 455 - -
Vium3490g00001 709 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Vium3490g00001 709 MobiDBLite consensus disorder prediction 1 21 - -
Vium3490g00001 709 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Vium3490g00001 709 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
Vium3490g00001 709 MobiDBLite consensus disorder prediction 608 622 - -
Vium3490g00001 709 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3490g00001 709 MobiDBLite consensus disorder prediction 579 598 - -
Vium3490g00001 709 MobiDBLite consensus disorder prediction 434 469 - -
Vium3490g00001 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vium3490g00001 709 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3490g00001 709 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Vium3490g00001 709 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Vium3490g00001 709 MobiDBLite consensus disorder prediction 422 542 - -
Vium3490g00001 709 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3490g00001 709 PANTHER CELL DIVISION PROTEIN KINASE 129 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3490g00001 Vium-Chr3490 5648 12430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3490g00001 123 472 Core Cell Cycle Gene Families AT5G10270 51.639 3.07e-119 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium3490g00001 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3490g00001 - - gmx:100792173 1342.79