Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3489g00016 ATGGGGAACTGCAACGCGTGCGTGAGAGATGACGTGGCAGAGTCAAACCGCGGGAGAAAGAAGAAAACGAAGCCCACCAACCCTTACGCGGAGGAGGGGCTCCGTTCGGGAGTTCCGATCCGCGTGCTGAAGGACGTGACGTCGCGGAGCTTCATCGGGGACAAGTACGTGATAGGTCGGGAGCTAGGTCGGGGGGAGTTCGGGATAACGTATCTGTGCACGGACCGGGAGACGAAGCAGGAGCTGGCCTGCAAGTCCATCTCCAAGCGCAAGCTCAGGACCGCCGTTGACGTGGAGGACGTGCGGCGCGAGGTCGCCATCATGTCCACTCTTCCGGACCACGCCAACGTCGTCAAGCTCAAAGCCACTTACGAGGACCAGGAGAACGTTCACCTCGTCATGGAGCTCTGTGCCGGTGGCGAACTCTTTGACCGGATCGTCGCACGTGGCCACTACAGCGAGCGTGCGGCCGCGCACGTGGCCAGAACCATTGCTGTGGTCGTCAGAATGTGTCACGCCAATGGCGTCATGCATCGAGACCTTAAGCCGGAAAATTTCCTCTTTGCGAATAAGAAGGAGAATTCTGTACTTAAAGCCATTGATTTCGGTCTCTCCGTGTTTTTCAAACCTGGGGAGAGATTTTCTGAGATTGTGGGGAGTCCTTACTACATGGCACCAGAGGTATTGAAGAGGAATTATGGGCCAGAAGTGGATGTGTGGAGTGCTGGTGTGATTCTTTATATTTTATTGTGTGGGGTTCCTCCGTTTTGGGCAGACGACGAACGAGGGGTGGCTCTGGCGATTTTGAGGGGAGTGATTGACTTCAAGAGAGAACCGTGGCCTCAGATTTCGGACAGTGCGAAGAGCCTTGTGCGCCAAATGTTGGAGCCTGATCCCAAGAAGCGCTTGACGGCTGAACAGGTGCTTGAACATCCCTGGTTGCAGAATGCAAAGAAAGCTTCAAATGTTCCGTTAGGAGATATTGTGAGGACGAGGCTTAAGCAGTTCTCTGTCATGAATAGATTCAAAAAGAGAGCACTTCGGGTAATTGCAGAGCACTTATCTGTTGAAGAGGTAGAAATCATCAGAGACATGTTTACATTGATGGATACTGACAAAGATGGCAAAGTAACATACGAGGAACTGAAGGCTGGGTTGCAGAAGGTTGGTTCACAATTGGCTGAGCCAGAGATTAAGATGCTGATGGATGTGGCCGATGTTGATGGGAACGGAGTACTTGACTATGGAGAGTTCGTAGCCGTGACAATTCACTTGCAAAGAATGGAGAATGATGAACATTTCCGAAAAGCATTCATGTTTTTTGACAAAGACGGGAGTGGCTATATTGAGTTTGGTGAGCTAGAGACAGCATTAGTAGATGAGTCGGGAGAAAATGACACTGCTATATTGAATGACATCATGCGTGAAGTTGACACTGACAAGGATGGTCGCATCAGTTATGAAGAGTTTGTGGCGATGATGAAAACTGGAACCGATTGGAGAAAAGCATCTAGACAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGATGGGTCACTTCAGCTTCATGACGGAATTAGTGGTCAAGCTGTGGTGGTTTGA 1617 0.5015 MGNCNACVRDDVAESNRGRKKKTKPTNPYAEEGLRSGVPIRVLKDVTSRSFIGDKYVIGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPDHANVVKLKATYEDQENVHLVMELCAGGELFDRIVARGHYSERAAAHVARTIAVVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWADDERGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIRDMFTLMDTDKDGKVTYEELKAGLQKVGSQLAEPEIKMLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMFFDKDGSGYIEFGELETALVDESGENDTAILNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3489g00016 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Vium3489g00016 538 ProSiteProfiles EF-hand calcium-binding domain profile. 393 428 IPR002048 GO:0005509
Vium3489g00016 538 CDD STKc_CAMK 55 313 - -
Vium3489g00016 538 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Vium3489g00016 538 Pfam EF-hand domain pair 362 421 IPR002048 GO:0005509
Vium3489g00016 538 Pfam EF-hand domain pair 432 495 IPR002048 GO:0005509
Vium3489g00016 538 ProSitePatterns EF-hand calcium-binding domain. 406 418 IPR018247 -
Vium3489g00016 538 SMART efh_1 397 425 IPR002048 GO:0005509
Vium3489g00016 538 SMART efh_1 469 497 IPR002048 GO:0005509
Vium3489g00016 538 SMART efh_1 361 389 IPR002048 GO:0005509
Vium3489g00016 538 SMART efh_1 433 461 IPR002048 GO:0005509
Vium3489g00016 538 FunFam Calcium-dependent protein kinase 1 58 141 - -
Vium3489g00016 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 48 490 - -
Vium3489g00016 538 ProSiteProfiles EF-hand calcium-binding domain profile. 465 500 IPR002048 GO:0005509
Vium3489g00016 538 ProSitePatterns EF-hand calcium-binding domain. 442 454 IPR018247 -
Vium3489g00016 538 Gene3D Transferase(Phosphotransferase) domain 1 142 322 - -
Vium3489g00016 538 SUPERFAMILY EF-hand 342 521 IPR011992 -
Vium3489g00016 538 ProSiteProfiles Protein kinase domain profile. 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3489g00016 538 ProSitePatterns EF-hand calcium-binding domain. 478 490 IPR018247 -
Vium3489g00016 538 FunFam Calcium-dependent protein kinase 7 323 498 - -
Vium3489g00016 538 FunFam calcium-dependent protein kinase 13 142 322 - -
Vium3489g00016 538 Gene3D - 323 498 - -
Vium3489g00016 538 ProSiteProfiles EF-hand calcium-binding domain profile. 429 464 IPR002048 GO:0005509
Vium3489g00016 538 SMART serkin_6 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3489g00016 538 Gene3D Phosphorylase Kinase; domain 1 57 141 - -
Vium3489g00016 538 ProSiteProfiles EF-hand calcium-binding domain profile. 357 392 IPR002048 GO:0005509
Vium3489g00016 538 CDD EFh 433 495 IPR002048 GO:0005509
Vium3489g00016 538 Pfam Protein kinase domain 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3489g00016 538 SUPERFAMILY Protein kinase-like (PK-like) 53 322 IPR011009 -
Vium3489g00016 538 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3489g00016 Vium-Chr3489 193489 197005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3489g00016 1 538 EF-hand Containing Proteins AT1G74740 78.967 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium3489g00016 Pkinase 2.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3489g00016 K13412 - gmx:100800559 1009.98