Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3489g00015 ATGGGGCACAAAAAGCGAAACCCTGCTCCGCGCACGAAACAACCCGCGGCGGCTTCTCCGGCGGTGCAATCCGGCGTCGGCGGAGCCGCCAACGGTGCCACCTCGCCGGACGCTGATGTTAGCAATGTTTCCGATCACAAACCACATAACCCTAGCAAGATCGAATTGGCTCCGTCTCTATCCGAGGGTTCTGAGTACTCCACAATCAAGCTCGAATGCGAGCGCGCTCTCACGACGCTCCGCCGAGGGAACCACAACAAGGCAATGAAGCTGTTGCGGGAGATTTGCGCCAGAGAGGAGGGTTCGCCTCACTCAGCGTTCGTCCACCGAGTTCACAGTCTCATGTGTTTCAAAACGGCGACGGTTATCACCGACCCTAGTTCGAAGCAGCGACATTTGAAGAACGCGCTCGAGTCAGCGCGCCGCGCGGTGGAGCTTATGCCGAATTCTGTTGAGTACGCGCATTTCCGTGCCACGGTAATGTTGGAGGCGGCAACTGAAGGTAAGGATTACGAGGATGTGGTGCATGAGTGCGAGAGGGGGCTGGCCATCGAGAACCCCAGTGATCCTGCCAAGGAGACGTTGCAGGATGAGAGCGAGCAGAAAGCATCATCTACTGAGGAGCGTATTGCGCATGTGCAGAATGAGTTGAGACAGCTTATTCAGAAGTCGAATATAGCTTCCTTGTCGTCTTGGATGAAGAATTTGAGTAACGGGGAGGAGAGATTTCGATTGATTCCGATAAGGAGGACCCCAGAGGACCCGATGGAGGTGAGGCTGGTTCAAACTAGAAGGCCTAATGAAATCAAGAAGGTGACCAAGACGCCCGAAGAAAGACGGAAGGAAATTGAAGTGCGAGTGGCTGCTGCCAGGCTTTTGCAGCAGAAGTCAGAGGCACCACAATCTCCGAATGAAGGAGATAGGGATGACAGACCGTTGGATTCTTCTGGAGGATCTGGTCAGAGGATTGGTGATAGGAGAAGGCATGGAAATGTGAAAAAGAGTGGCTTTACAGCGGAAAGGATGAAATGGGTACATTCTTATTGGAATTCGGTTAGCATGGATAGGAAGAAGGACTTTCTTAGGGTTAAAATTTGTGATCTTAAGTCGCACTATGGGTCTTCGAAGGATACTTTGCCGAATGATATCTTGTCAGAGGCTTTGTCTTATGCCGAGGCCAATAAAACTTGGAAATTTTGGGCTTGCTGCAACTGTGAAGAGAAACATTCCAACCCGGATTCTCACAGGCATCATGTTGTGCAAGAGCATATGGGGAGTCTGTCGCCACAGATGCAGAGACTTCTGCCCCAAAATGTGGATAGTGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCCCTGGATGTCTTAGCTGCAGTTAGAATGCTTGATAATAAAGCAAGGTTCAAAAGTCCATCACTTCCTGAGGATTTGTACTTGGATCATCATACTCTGGACTATAATGTTTGTTTTAAAGAAGCAAGCAGCTCTTACATTGAGAAGGAAAGTTCAGGGGACACTCTTCGTAATTGTTTGGAAGAATGCAATAACAATTGCAAAATTATAGAAAATGATGTAAGAGAAGGTGTTGAAGACCAACTATCTGTGGTTGATCGCATTATTGATTGTTGGCCAGTATCTGATGATCCTGAGCGTGCAAAACTTCTGGGGAAAATCCATGCCATGTTTGAGACTCTTATTAGGCATAAATGTCTTGCTGCTAGTCATCTGAACAAGGTCATACAATTTACTATGGGTGAGATACAGGGTCTCGCTGCTGGTTCGCAACTTCTAAATCATGGCGTGGACCAAACACCAATGTGCATATGCTTTCTAGGACCTTCACAGCTTAAGACAATTTTCCAATTTCTGCAGGAAATATCTCACGCATGTGGGTTGGCCAGACATGCTGATAAAGGTAGTAGTCCCACAAATGATTCACTGAATATCACTCAGGGTCCCGAGATTAAAGACAAGATTGTACTCGATGGAGATGCATCACGACTCCTACTGGATGAGTGTTTACTGCAAACACAAGTCACTGCTGGTACAAATCAGGGGTCTGTCTTGGATGATGTGACCACCCCAAGGTCTCCAGATGGAATTTCATGCTATAACAATGCTTTGCTATCCTGGATATTTTCAAGTTCCCCTATTGGAGATCAAGTGACATCATGGCTGCGGATCAGAGAAGATAAAATAAATAAAGGGAAGGAAATTGTCCAGATGCTTGAGAAAGAGTTTTATCACCTACAGGGACTATGTGAGAAAAAGGGTGAGCGTTTAAGTTATGAGGAAGCACTGCAAACAGTAGAGGATCTATGTCTTGAAGAAGGTAAGAAGAGGGAAACTCTTGGGGAATTTGTTCAGCGAAGCTATGAATCTGTCTTAAGAAAAAGAAGAGAAGAGCTCATTGAGAGTGAGAATGATATGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAAGGAATGTTAATCAATTTGGTTACAAGGAAGCTTATGCTGGTGTGACTTCTCAATTATGTGACTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGACTACTTGCATCAAATGGATGGCTGCATAGAAAATGCTATTCAGAAACTGAAGGAGCATTTATCTATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGGAGTGTCACAGAGATGCAGCAATTGGAATTCAAGCTTGGGCCTATTTCTGCTAATGATTATCGAGCAATATTAGTGCCTCTAGTGAAGTCGTACCTGAGGGCACTTTTGGAAGATTTGGCCGAGAAAGATGCAAGAGAGAAGTCTGATGCTGCTAGTGAAGCATTTTTGGCTGAACTTGCTCTAGATTCCAAGAAGACTGTTAAAAGCGGAAGTGAGAACACAAAACATGTCGAGAAAACAAAAGATAGGAAGAAGAATAAAGATCACAGAAAAGCAAGAGATTTGAAGGCCTCGGGTGATCATGTGCAATTCTCAGTGGGATCTACAATTCCTGATTCCAATCTTGTTGCACCTGAAAGTGACTTCCTAGATCATGAGGTTGTTTCTATGAATGATGATGACCTGGAACAACTCGAAGAGGAATTTAGACGTAAAATTGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAGTTCCAGCGAAGGATAGAAAATGAAGCCAAACAGAGGCATCTTGCAGAGCAACAAAAAAGGTCATCTGGGTTGTACTTAGAAGTGGAAGATCTTCAAGATTTTCTGACAAAGGAAGATATGGGTTCCCCAGATTCATACAAACATGACCAGTTGGTACAGGATAATGGATCCCGAAGTAGTCTGGATGGTGTGCTTATGCCCACAGCAAACGGTTCCATTTATTTGCATCAGTCAAAAGTTAAACAAGCAGATTTGCCTAATGGAGTTATTCGAGAGAATGGCCTACCTGTGGCTGATCGGCGCACTGGAAAAAAACATAAACGGAGGAATTCCTCCAGACCAGTCGATGGAAAGATTGAATCTTTTTCATCAGAAAAAGAGAGTACTGAGGATACACATCCTGAGTCTCACTTAAGAGAGAAATTTAAATTTAGTAACAGTCAAGTCAATAATAATGTGTGGAAAAACAACGGATCAAATGCGAAGAGAGAGTTGCCTGTTGAAGATGCGGAGGAGGAAAGATTCCAGGCTGATCTTGAAATTGCTGTACGCCAAAGCCTGGACACGTTTCAAGCTCGGGGAAATTTGCCTTTGGCTTCCAGTTTAAGGATGTCCCAGAGAGCTTCTTCAGTGGTAGATAGTGTTGATTGCCGGCCTGGAGAAGACCCAACGGATAATTTGGATGGAGCTACTTTGCTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTCGAGTAGAATTTCTTGGCAGATCAAGAACAGAGCATGATCATGTGGGCAATCCTTGCGTTGTCTGTGCATTGTACGAAATCTTTACTGCACTGGACATTGCATCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACATCCTTGCGGATAGCTCTAAGTAATCTGTATCCTCACAGTAGTTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCGGTCATTTACGCGTGGTTCAAGTGTTTCTGATGCAGAATCAGCTGAAAGTAACTGCGTGGGATCCTGGGATTGTGCAAATGATAGTTGTATAGCACACTCACTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTATCACTGTGGTCTTGAATCCAGACATATGAAATATACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTACGCGATATGAAGGAAAAGTCTTCTGCAAGTTTCTTTGATAATCTTTTGAATCTTGTGGAGATGAACCATCAGTTGGCTTGCGACCCAGAAGCTGATGGTTGTGGCAAGCTGAACCACATCCATCACTTTCTCTCAACTCCACCCCATGTTTTTATGACAGTACTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAGCAGCAACTCTGGCTGCCCTGAGCACCACAATCAATATCAGTGCCCTTTATGGTGGTTTAAATCTTGAATGCACCCATAACTTGGTGTCAGTGGTTTGCTACTATGGTCAGCACTACCATTGCTTTGCTTATAGTCATGACCATGAACAATGGATTATGTATGATGATAAGACTGTCAAGGTAATTGGTGGATGGGCGGATGTTGTTACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAA 4887 0.4399 MGHKKRNPAPRTKQPAAASPAVQSGVGGAANGATSPDADVSNVSDHKPHNPSKIELAPSLSEGSEYSTIKLECERALTTLRRGNHNKAMKLLREICAREEGSPHSAFVHRVHSLMCFKTATVITDPSSKQRHLKNALESARRAVELMPNSVEYAHFRATVMLEAATEGKDYEDVVHECERGLAIENPSDPAKETLQDESEQKASSTEERIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRTPEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSEAPQSPNEGDRDDRPLDSSGGSGQRIGDRRRHGNVKKSGFTAERMKWVHSYWNSVSMDRKKDFLRVKICDLKSHYGSSKDTLPNDILSEALSYAEANKTWKFWACCNCEEKHSNPDSHRHHVVQEHMGSLSPQMQRLLPQNVDSEWIEMILNCSWKPLDVLAAVRMLDNKARFKSPSLPEDLYLDHHTLDYNVCFKEASSSYIEKESSGDTLRNCLEECNNNCKIIENDVREGVEDQLSVVDRIIDCWPVSDDPERAKLLGKIHAMFETLIRHKCLAASHLNKVIQFTMGEIQGLAAGSQLLNHGVDQTPMCICFLGPSQLKTIFQFLQEISHACGLARHADKGSSPTNDSLNITQGPEIKDKIVLDGDASRLLLDECLLQTQVTAGTNQGSVLDDVTTPRSPDGISCYNNALLSWIFSSSPIGDQVTSWLRIREDKINKGKEIVQMLEKEFYHLQGLCEKKGERLSYEEALQTVEDLCLEEGKKRETLGEFVQRSYESVLRKRREELIESENDMMYVSNRFELDAISNVLQEAEARNVNQFGYKEAYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIENAIQKLKEHLSIELSKIDARIIRSVTEMQQLEFKLGPISANDYRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKTVKSGSENTKHVEKTKDRKKNKDHRKARDLKASGDHVQFSVGSTIPDSNLVAPESDFLDHEVVSMNDDDLEQLEEEFRRKIELEEEEKKLEETLEFQRRIENEAKQRHLAEQQKRSSGLYLEVEDLQDFLTKEDMGSPDSYKHDQLVQDNGSRSSLDGVLMPTANGSIYLHQSKVKQADLPNGVIRENGLPVADRRTGKKHKRRNSSRPVDGKIESFSSEKESTEDTHPESHLREKFKFSNSQVNNNVWKNNGSNAKRELPVEDAEEERFQADLEIAVRQSLDTFQARGNLPLASSLRMSQRASSVVDSVDCRPGEDPTDNLDGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRTEHDHVGNPCVVCALYEIFTALDIASKDSRREAVAPTSLRIALSNLYPHSSFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDAESAESNCVGSWDCANDSCIAHSLFGMNIFEQMNCYHCGLESRHMKYTSFFHNINASALRDMKEKSSASFFDNLLNLVEMNHQLACDPEADGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDIAATLAALSTTINISALYGGLNLECTHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWADVVTMCERGHLQPQVLFFEAVN 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3489g00015 1628 Gene3D Cysteine proteinases 1288 1626 - -
Vium3489g00015 1628 MobiDBLite consensus disorder prediction 1203 1219 - -
Vium3489g00015 1628 MobiDBLite consensus disorder prediction 191 208 - -
Vium3489g00015 1628 MobiDBLite consensus disorder prediction 292 334 - -
Vium3489g00015 1628 MobiDBLite consensus disorder prediction 1151 1229 - -
Vium3489g00015 1628 Gene3D Tetratricopeptide repeat domain 56 221 IPR011990 GO:0005515
Vium3489g00015 1628 Pfam Ubiquitin carboxyl-terminal hydrolase 1296 1603 IPR001394 GO:0004843|GO:0016579
Vium3489g00015 1628 MobiDBLite consensus disorder prediction 1 61 - -
Vium3489g00015 1628 MobiDBLite consensus disorder prediction 1173 1202 - -
Vium3489g00015 1628 MobiDBLite consensus disorder prediction 183 208 - -
Vium3489g00015 1628 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Vium3489g00015 1628 Pfam Protein of unknown function (DUF629) 345 878 IPR006865 -
Vium3489g00015 1628 SUPERFAMILY Cysteine proteinases 1295 1625 IPR038765 -
Vium3489g00015 1628 MobiDBLite consensus disorder prediction 302 334 - -
Vium3489g00015 1628 MobiDBLite consensus disorder prediction 1099 1119 - -
Vium3489g00015 1628 CDD Peptidase_C19 1386 1625 - -
Vium3489g00015 1628 Coils Coil 196 223 - -
Vium3489g00015 1628 MobiDBLite consensus disorder prediction 967 998 - -
Vium3489g00015 1628 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1295 1627 IPR028889 -
Vium3489g00015 1628 Coils Coil 1031 1072 - -
Vium3489g00015 1628 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3489g00015 Vium-Chr3489 178377 187881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3489g00015 69 1625 C2H2 Transcription Factor Family AT3G47890 55.409 0.0 1635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3489g00015 - - gmx:100799759 2778.04