Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3489g00014 ATGGGGCACAAAAAGCGAAACCCTGCTCCGCGCACGAAACAACCCGCGGCGGCTTCTCCGGCGGTGCAATCCGGCGTCGGCGGAGCCGCCAACGGTGCCACCTCGCCGGACGCTGATGTTAGCAATGTTTCCGATCACAAACCACATAACCCTAGCAAGATCGAATTGGCTCCGTCTCTATCCGAGGGTTCTGAGTACTCCACAATCAAGCTCGAATGCGAGCGCGCTCTCACGACGCTCCGCCGAGGGAACCACAACAAGGCAATGAAGCTGTTGCGGGAGATTTGCGCCAGAGAGGAGGGTTCGCCTCACTCAGCGTTCGTCCACCGAGTTCACAGTCTCATGTGTTTCAAAACGGCGACGGTTATCACCGACCCTAGTTCGAAGCAGCGACATTTGAAGAACGCGCTCGAGTCAGCGCGCCGCGCGGTGGAGCTTATGCCGAATTCTGTTGAGTACGCGCATTTCCGTGCCACGGTAATGTTGGAGGCGGCAACTGAAGGTAAGGATTACGAGGATGTGGTGCATGAGTGCGAGAGGGGGCTGGCCATCGAGAACCCCAGTGATCCTGCCAAGGAGACGTTGCAGGATGAGAGCGAGCAGAAAGCATCATCTACTGAGGAGCGTATTGCGCATGTGCAGAATGAGTTGAGACAGCTTATTCAGAAGTCGAATATAGCTTCCTTGTCGTCTTGGATGAAGAATTTGAGTAACGGGGAGGAGAGATTTCGATTGATTCCGATAAGGAGGACCCCAGAGGACCCGATGGAGGTGAGGCTGGTTCAAACTAGAAGGCCTAATGAAATCAAGAAGGTGACCAAGACGCCCGAAGAAAGACGGAAGGAAATTGAAGTGCGAGTGGCTGCTGCCAGGCTTTTGCAGCAGAAGTCAGAGGCACCACAATCTCCGAATGAAGGAGATAGGGATGACAGACCGTTGGATTCTTCTGGAGGATCTGGTCAGAGGATTGGTGATAGGAGAAGGCATGGAAATGTGAAAAAGAGTGGCTTTACAGCGGAAAGGATGAAATGGGTACATTCTTATTGGAATTCGGTTAGCATGGATAGGAAGAAGGACTTTCTTAGGGTTAAAATTTGTGATCTTAAGTCGCACTATGGGTCTTCGAAGGATACTTTGCCGAATGATATCTTGTCAGAGGCTTTGTCTTATGCCGAGGCCAATAAAACTTGGAAATTTTGGGCTTGCTGCAACTGTGAAGAGAAACATTCCAACCCGGATTCTCACAGGCATCATGTTGTGCAAGAGCATATGGGGAGTCTGTCGCCACAGATGCAGAGACTTCTGCCCCAAAATGTGGATAGTGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCCCTGGATGTCTTAGCTGCAGTTAGAATGCTTGATAATAAAGCAAGGTTCAAAAGTCCATCACTTCCTGAGGATTTGTACTTGGATCATCATACTCTGGACTATAATGTTTGTTTTAAAGAAGCAAGCAGCTCTTACATTGAGAAGGAAAGTTCAGGGGACACTCTTCGTAATTGTTTGGAAGAATGCAATAACAATTGCAAAATTATAGAAAATGATGTAAGAGAAGGTGTTGAAGACCAACTATCTGTGGTTGATCGCATTATTGATTGTTGGCCAGTATCTGATGATCCTGAGCGTGCAAAACTTCTGGGGAAAATCCATGCCATGTTTGAGACTCTTATTAGGCATAAATGTCTTGCTGCTAGTCATCTGAACAAGGTCATACAATTTACTATGGGTGAGATACAGGGTCTCGCTGCTGGTTCGCAACTTCTAAATCATGGCGTGGACCAAACACCAATGTGCATATGCTTTCTAGGACCTTCACAGCTTAAGACAATTTTCCAATTTCTGCAGGAAATATCTCACGCATGTGGGTTGGCCAGACATGCTGATAAAGGTAGTAGTCCCACAAATGATTCACTGAATATCACTCAGGGTCCCGAGATTAAAGACAAGATTGTACTCGATGGAGATGCATCACGACTCCTACTGGATGAGTGTTTACTGCAAACACAAGTCACTGCTGGTACAAATCAGGGGTCTGTCTTGGATGATGTGACCACCCCAAGGTCTCCAGATGGAATTTCATGCTATAACAATGCTTTGCTATCCTGGATATTTTCAAGTTCCCCTATTGGAGATCAAGTGACATCATGGCTGCGGATCAGAGAAGATAAAATAAATAAAGGGAAGGAAATTGTCCAGATGCTTGAGAAAGAGTTTTATCACCTACAGGGACTATGTGAGAAAAAGGGTGAGCGTTTAAGTTATGAGGAAGCACTGCAAACAGTAGAGGATCTATGTCTTGAAGAAGGTAAGAAGAGGGAAACTCTTGGGGAATTTGTTCAGCGAAGCTATGAATCTGTCTTAAGAAAAAGAAGAGAAGAGCTCATTGAGAGTGAGAATGATATGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAAGGAATGTTAATCAATTTGGTTACAAGGAAGCTTATGCTGGTGTGACTTCTCAATTATGTGACTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGACTACTTGCATCAAATGGATGGCTGCATAGAAAATGCTATTCAGAAACTGAAGGAGCATTTATCTATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGGAGTGTCACAGAGATGCAGCAATTGGAATTCAAGCTTGGGCCTATTTCTGCTAATGATTATCGAGCAATATTAGTGCCTCTAGTGAAGTCGTACCTGAGGGCACTTTTGGAAGATTTGGCCGAGAAAGATGCAAGAGAGAAGTCTGATGCTGCTAGTGAAGCATTTTTGGCTGAACTTGCTCTAGATTCCAAGAAGACTGTTAAAAGCGGAAGTGAGAACACAAAACATGTCGAGAAAACAAAAGATAGGAAGAAGAATAAAGATCACAGAAAAGCAAGAGATTTGAAGGCCTCGGGTGATCATGTGCAATTCTCAGTGGGATCTACAATTCCTGATTCCAATCTTGTTGCACCTGAAAGTGACTTCCTAGATCATGAGGTTGTTTCTATGAATGATGATGACCTGGAACAACTCGAAGAGGAATTTAGACGTAAAATTGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAGTTCCAGCGAAGGATAGAAAATGAAGCCAAACAGAGGCATCTTGCAGAGCAACAAAAAAGGTCATCTGGGTTGTACTTAGAAGTGGAAGATCTTCAAGATTTTCTGACAAAGGAAGATATGGGTTCCCCAGATTCATACAAACATGACCAGTTGGTACAGGATAATGGATCCCGAAGTAGTCTGGATGGTGTGCTTATGCCCACAGCAAACGGTTCCATTTATTTGCATCAGTCAAAAGTTAAACAAGATTTGCCTAATGGAGTTATTCGAGAGAATGGCCTACCTGTGGCTGATCGGCGCACTGGAAAAAAACATAAACGGAGGAATTCCTCCAGACCAGTCGATGGAAAGATTGAATCTTTTTCATCAGAAAAAGAGAGTACTGAGGATACACATCCTGAGTCTCACTTAAGAGAGAAATTTAAATTTAGTAACAGTCAAGTCAATAATAATGTGTGGAAAAACAACGGATCAAATGCGAAGAGAGAGTTGCCTGTTGAAGATGCGGAGGAGGAAAGATTCCAGGCTGATCTTGAAATTGCTGTACGCCAAAGCCTGGACACGTTTCAAGCTCGGGGAAATTTGCCTTTGGCTTCCAGTTTAAGGATGTCCCAGAGAGCTTCTTCAGTGGTAGATAGTGTTGATTGCCGGCCTGGAGAAGACCCAACGGATAATTTGGATGGAGCTACTTTGCTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTCGAGTAGAATTTCTTGGCAGATCAAGAACAGAGCATGATCATGTGGGCAATCCTTGCGTTGTCTGTGCATTGTACGAAATCTTTACTGCACTGGACATTGCATCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACATCCTTGCGGATAGCTCTAAGTAATCTGTATCCTCACAGTAGTTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCGGTCATTTACGCGTGGTTCAAGTGTTTCTGATGCAGAATCAGCTGAAAGTAACTGCGTGGGATCCTGGGATTGTGCAAATGATAGTTGTATAGCACACTCACTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTATCACTGTGGTCTTGAATCCAGACATATGAAATATACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTACGCGATATGAAGGAAAAGTCTTCTGCAAGTTTCTTTGATAATCTTTTGAATCTTGTGGAGATGAACCATCAGTTGGCTTGCGACCCAGAAGCTGATGGTTGTGGCAAGCTGAACCACATCCATCACTTTCTCTCAACTCCACCCCATGTTTTTATGACAGTACTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAGCAGCAACTCTGGCTGCCCTGAGCACCACAATCAATATCAGTGCCCTTTATGGTGGTTTAAATCTTGAATGCACCCATAACTTGGTGTCAGTGGTTTGCTACTATGGTCAGCACTACCATTGCTTTGCTTATAGTCATGACCATGAACAATGGATTATGTATGATGATAAGACTGTCAAGGTAATTGGTGGATGGGCGGATGTTGTTACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAA 4884 0.4398 MGHKKRNPAPRTKQPAAASPAVQSGVGGAANGATSPDADVSNVSDHKPHNPSKIELAPSLSEGSEYSTIKLECERALTTLRRGNHNKAMKLLREICAREEGSPHSAFVHRVHSLMCFKTATVITDPSSKQRHLKNALESARRAVELMPNSVEYAHFRATVMLEAATEGKDYEDVVHECERGLAIENPSDPAKETLQDESEQKASSTEERIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRTPEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSEAPQSPNEGDRDDRPLDSSGGSGQRIGDRRRHGNVKKSGFTAERMKWVHSYWNSVSMDRKKDFLRVKICDLKSHYGSSKDTLPNDILSEALSYAEANKTWKFWACCNCEEKHSNPDSHRHHVVQEHMGSLSPQMQRLLPQNVDSEWIEMILNCSWKPLDVLAAVRMLDNKARFKSPSLPEDLYLDHHTLDYNVCFKEASSSYIEKESSGDTLRNCLEECNNNCKIIENDVREGVEDQLSVVDRIIDCWPVSDDPERAKLLGKIHAMFETLIRHKCLAASHLNKVIQFTMGEIQGLAAGSQLLNHGVDQTPMCICFLGPSQLKTIFQFLQEISHACGLARHADKGSSPTNDSLNITQGPEIKDKIVLDGDASRLLLDECLLQTQVTAGTNQGSVLDDVTTPRSPDGISCYNNALLSWIFSSSPIGDQVTSWLRIREDKINKGKEIVQMLEKEFYHLQGLCEKKGERLSYEEALQTVEDLCLEEGKKRETLGEFVQRSYESVLRKRREELIESENDMMYVSNRFELDAISNVLQEAEARNVNQFGYKEAYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIENAIQKLKEHLSIELSKIDARIIRSVTEMQQLEFKLGPISANDYRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKTVKSGSENTKHVEKTKDRKKNKDHRKARDLKASGDHVQFSVGSTIPDSNLVAPESDFLDHEVVSMNDDDLEQLEEEFRRKIELEEEEKKLEETLEFQRRIENEAKQRHLAEQQKRSSGLYLEVEDLQDFLTKEDMGSPDSYKHDQLVQDNGSRSSLDGVLMPTANGSIYLHQSKVKQDLPNGVIRENGLPVADRRTGKKHKRRNSSRPVDGKIESFSSEKESTEDTHPESHLREKFKFSNSQVNNNVWKNNGSNAKRELPVEDAEEERFQADLEIAVRQSLDTFQARGNLPLASSLRMSQRASSVVDSVDCRPGEDPTDNLDGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRTEHDHVGNPCVVCALYEIFTALDIASKDSRREAVAPTSLRIALSNLYPHSSFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDAESAESNCVGSWDCANDSCIAHSLFGMNIFEQMNCYHCGLESRHMKYTSFFHNINASALRDMKEKSSASFFDNLLNLVEMNHQLACDPEADGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDIAATLAALSTTINISALYGGLNLECTHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWADVVTMCERGHLQPQVLFFEAVN 1627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3489g00014 1627 MobiDBLite consensus disorder prediction 1172 1201 - -
Vium3489g00014 1627 Pfam Ubiquitin carboxyl-terminal hydrolase 1295 1602 IPR001394 GO:0004843|GO:0016579
Vium3489g00014 1627 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1294 1626 IPR028889 -
Vium3489g00014 1627 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1626 - -
Vium3489g00014 1627 MobiDBLite consensus disorder prediction 191 208 - -
Vium3489g00014 1627 MobiDBLite consensus disorder prediction 292 334 - -
Vium3489g00014 1627 Gene3D Tetratricopeptide repeat domain 56 221 IPR011990 GO:0005515
Vium3489g00014 1627 MobiDBLite consensus disorder prediction 1 61 - -
Vium3489g00014 1627 MobiDBLite consensus disorder prediction 183 208 - -
Vium3489g00014 1627 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Vium3489g00014 1627 SUPERFAMILY Cysteine proteinases 1294 1624 IPR038765 -
Vium3489g00014 1627 Gene3D Cysteine proteinases 1287 1625 - -
Vium3489g00014 1627 Pfam Protein of unknown function (DUF629) 345 878 IPR006865 -
Vium3489g00014 1627 CDD Peptidase_C19 1385 1624 - -
Vium3489g00014 1627 MobiDBLite consensus disorder prediction 302 334 - -
Vium3489g00014 1627 MobiDBLite consensus disorder prediction 1208 1227 - -
Vium3489g00014 1627 MobiDBLite consensus disorder prediction 1145 1203 - -
Vium3489g00014 1627 Coils Coil 196 223 - -
Vium3489g00014 1627 MobiDBLite consensus disorder prediction 967 998 - -
Vium3489g00014 1627 MobiDBLite consensus disorder prediction 1098 1119 - -
Vium3489g00014 1627 Coils Coil 1031 1072 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3489g00014 Vium-Chr3489 178377 187881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3489g00014 69 1624 C2H2 Transcription Factor Family AT3G47890 55.346 0.0 1635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3489g00014 - - gmx:100799759 2773.42