Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3489g00013 ATGACCCTTAAGGGTGGCACGACCCAAGCCTGTGCGGCATGCAAACATCAGAGGAGAAAGTGCACTTCTGAATGCCTTCTTGCACCCTACTTCCCCGCAGACCAACCCAATGTTTTTCTCAATGTCCACAGGCTTTTTGGAGTCAGCAACATCGTTAAGATATTGAAGATTTTGGAGCCTAACCAGAAGAAAATAGCCATGGACTCTATCATTATTCAAGCAAATTATAGGGATAAGTACCCTGTGCATGGCTGTTGGGAAGAGATTTGTAGGTTACAATACCAAACATGGCTTGCAGAAGAAGAGCTTCATGCAGTTTATCAACAGCTTCAAATATGTAGGCAGCAACAGCAACAGCAACAACAGCAACAGCATCGTCCTCCTCCCTTGCCGGATGATGTTACTTCACAATTAGAATTGGGCATGACACCATGTACTAACAATAATGCACTCCCATTGTTTAATCATCATACTCCACAACCAAACACTTACAACAATAATGTCACTGCATTCTCTGTGTCACAGCAACATTCCTATTCCAACAGTAACAGTATGGACTATAGCTCCCTCTACTTAGATTCCAAGGATAATGCCATGAATCCTTTGTGGGTTCAGTACCCCTGTTCAAATAATGACAATTCTGTAGGAATGCAAACTCCAATGCTTTCTTCACAGCCATTGCCCATTCAACAAAATGTTGTTGAGGATTATGTTGACATGCCTCCCATTTTTGATTCACTTGATGATAGACAATCGTACATTTATTCCAAGGAAGCTTACGAGTCAAGTTCAGAGGAATCACTGAAAGACATAAGAAAGTGCACAGAGGATGTTTCTGAGAATGAATTGAAGAGTGCTGCTGCCTGCTTTAGCCTTACCAGTGTCAACTAA 891 0.4198 MTLKGGTTQACAACKHQRRKCTSECLLAPYFPADQPNVFLNVHRLFGVSNIVKILKILEPNQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQTWLAEEELHAVYQQLQICRQQQQQQQQQQHRPPPLPDDVTSQLELGMTPCTNNNALPLFNHHTPQPNTYNNNVTAFSVSQQHSYSNSNSMDYSSLYLDSKDNAMNPLWVQYPCSNNDNSVGMQTPMLSSQPLPIQQNVVEDYVDMPPIFDSLDDRQSYIYSKEAYESSSEESLKDIRKCTEDVSENELKSAAACFSLTSVN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3489g00013 296 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Vium3489g00013 296 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 157 - -
Vium3489g00013 296 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3489g00013 Vium-Chr3489 164039 165671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3489g00013 1 114 AS2 family AT3G47870 63.158 2.78e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium3489g00013 LOB 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3489g00013 - - lang:109357116 362.459