Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3489g00012 ATGGACGACGGCGATCCTTCCCTGTCCGATAAAGAGGAGGAGAACGATGAGGAAGACGTGGCAGACATTCTGTTGCGAATTCCGATCGTCGATGCTCCCATACTCGTCTTTGTTTGCTTTCACAAGGCTTTTCGCTCTGAACTCGATCACCTTCGTCTCTTGGCGGAAACGGCGTCGTTGGAGAACGAGCCACGCCGTTGCCACCAACTGATCCTTCTGCTTCAACGTAGGTTCCAGTTTCTGAAATTAGCACATAAGTATCACTGTGCTGCGGAAGACGAGGTTATCTTTCTTGCACTGGATGCTCATGTGAAAAATGTCGTTTGTACATATTCGCTTGAACATAACAGCACCTCGGAGCTTTTTGGATCTGTTTTCCACTTCTTGGAAGAGCTGATGGTTCCTAAAGAGAATATTTCGAAGCTGTTCCAAGAACTTGTGTACTGTATTGGTATCTTGCAAACCTGCATCTACAAACATATGCTGAAAGAAGAAAAACAGGTTTTTCCCCTGTTGATGGAGAAATTATCAACTGAAGAACAGGCCTCTCTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCTGCAAGTAAGCAATCAGAAGTTACCCAGTGTTTAAGTGAAATCGTTCCAATGGAAAAAGCCCTGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAACAAACAAACCTTTACTGAGACCTGTTTTCAGAGTGGAGAATTTCAAGGTGTTGAGGGTTTCCTACATATAGAAAGATCACTAGAGCTGAGTTCTATTAGGAAAAGCGAAGAAACTTCAAGTATGACGGAAGTTAATGGCCGAGAAATAGAAGATGGGGCCAACCAGGTTAACGTCCTTCATTTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTACCTACTAAGAAAATCCAGCTGTTTTCAGAATTTAGACTCAGTACTTATCCAACTAAAGTTCTTTGCCGATGTCCTCATCTTCTAAAGCAATGCTCAGAAAAAATTCTTTAATCCTGTACTGAGTAAATATGCTTATGGCTGGTTGTCCAAGTCTATTGAACAATTTCTGAGTGAAAGTAACATTGAAGATATACAACAGTTGCTATTCTATAACTCAGAAAGTGGAATACCTTTGACCAAGTTCGTAGAGAAGCTTTGCCGAAAACTTGAATCATTTGTGTCAGGAGTCAACAAACAATTTGCTTTTCAAGAAAATGAGGTGTTTACCATATTTAGAAAGAACTGCAGAAATGGAATGCAAGAGAGACTTCTAAGCTTGAGCCTACATATGATGCCTCTGGGGTTGCTCAAATGTGTTATAACTTGGTTTTCAGTTCGATTGTCTGAAAAAGAGTCCAGGTCAATTCTCTATTGCATAAAGAAAGGAAACAATTCTGTCTGTAAAGCTTTTTCATCATTGTTACATGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCTATTGAAAAATTCAGACTAGACTTGCAAACCATGTTCAAAAGAAGATGCTTTAAGTCACCTGAACAAATTAAGGAAGCTCATGGATTTTCTTTCTTAAATTCTGAGAAGCAGCTTTATAAAATCTCAGACCAGAATTCTTTGTCCTGTTCCTCCTCATCTGGATCCAGTAATGTAAACAAGCATGAGATACCATATTCTATAGGAATTAATCTGCACATATTTTTTCCTGCCACAGTTGGGAAGTTATATCAGTATCCTGCATTACATGCAGCAGAACTATCTTCTATTTCCTTTCTTGATGATCCGAAACCAATTGACCTAATATTTTTCTTTCACAAAGCTATCAAGAAAGATTTGGAGTTCCTAGTTCTTGGCTCAGCCCAGCTAGAAAAAAATGGTAAGTTGCTTATGGATTTCCAAAAACGATTCCATCTCATATATTTTCTTCATCAAATCCACAGTGATGCTGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAAGAGGAAAACTAAAAAACATTAGCCATGCCTACACTTTTGATCACAAACATGAAATTGAACACTTCAATAAAATATCTCACATCCTTGATAAGATGTCTAGATTACATCTTTCAGTTTCTACAACTGATTCAAATGTAAAGGAGGCGGGACTGAGGAGGTATCAGCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATACATCGCTTTCCAATCATATAAACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAAAATTCTTCACAAATCAGGAGCAAGGGAAGATCATGGGATGCATGCTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTGACACAGGAAGAACAACACGTTTCAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGGTGAATGGTTAGGTGAATGGTGGGATGGGTACAGTTTAGCTAAGGTAACGGAGGGCTCAAATGATGCCCCTCCTCAGCCTGTTGAGCCAATGGAGATCATATCCAAATATTTATCTGAAGAAATTCTAAATGAATTGCAAGAAGAATCATCTGCCAACAAGAGCATAAATTTTTTGGAGAAGGATCGTGTCGGTGATAATGTTGAGCTGTCTAACTGCAACCACAATGATAATGTTAAGGTTCATAATGCAGAAAAAGAAGATAATCAATGTTCAAAAAGCACAAATCAATTTCATGATCACGACAAACATGCTTGCAATGAGGTAGCAGACTTCATGAATCCGGTAGTCAATGTAGGTAAGTCGTCTAAGCTTTGTGACGAGTCTGGGCGTTATGACCGACTTTTGAAATTGAGCCAAGATGATCTGGAGACTGTGATAAGAAGGGTGTCTCGTGACTCTTGCTTAGATCCTCAGAAAAAGTCGTACATAATACAGAACCTACTGATGAGCCGTTGGATTATTAGCCAGCAGATCTCTTCTACAGAAGTCAGTATAAAAAATGATGAACCGGAATTTCCTGGGAAGCATCCATCGTACAGGGATCCTCTCAAACTAATCTACGGATGTAAACACTACAAGAGGAATTGTAAGCTTTTTGCTCCATGTTGCAACCAACTTCATACCTGCATACATTGTCATAACGACGAATCAGATCATTCAATTGATAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCGGTGCCACATGCTCAACAATTTCTTGCAATTTATCGATGGCAAAATATTACTGCAGAATCTGCAAATTATTTGATGATGAAAGGGAAATCTACCATTGTCCTTACTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCCCGTTCTCTTATGGCGCATACATGCAGGGAGAAACATTTAGAGGACTACTGTCCAATTTGTCATGAATATATTTTCACATCCTGCTCTCCTGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACAAGCTTTAATTATATCTGCCCCATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAGTATTTCCGATGAGATGTCAGGTCAAACTCAGCTGCAGGCTATATTATGTAATGACTGTGAAAAGAAAGGATCAACTCCCTTCCACTGGCTCTACCACAAATGCCCTAGCTGTGGTTCCTACAACACCAGAGTTCTATGA 3792 0.3924 MDDGDPSLSDKEEENDEEDVADILLRIPIVDAPILVFVCFHKAFRSELDHLRLLAETASLENEPRRCHQLILLLQRRFQFLKLAHKYHCAAEDEVIFLALDAHVKNVVCTYSLEHNSTSELFGSVFHFLEELMVPKENISKLFQELVYCIGILQTCIYKHMLKEEKQVFPLLMEKLSTEEQASLVWQFICSVPIMLLEEVLPWMVSFLSASKQSEVTQCLSEIVPMEKALQEVLVSWLRSNKQTFTETCFQSGEFQGVEGFLHIERSLELSSIRKSEETSSMTEVNGREIEDGANQVNVLHFWHNAIKKDLKEILKELYLLRKSSCFQNLDSVLIQLKFFADVLIFXSNAQKKFFNPVLSKYAYGWLSKSIEQFLSESNIEDIQQLLFYNSESGIPLTKFVEKLCRKLESFVSGVNKQFAFQENEVFTIFRKNCRNGMQERLLSLSLHMMPLGLLKCVITWFSVRLSEKESRSILYCIKKGNNSVCKAFSSLLHEWFRIGYSGKTSIEKFRLDLQTMFKRRCFKSPEQIKEAHGFSFLNSEKQLYKISDQNSLSCSSSSGSSNVNKHEIPYSIGINLHIFFPATVGKLYQYPALHAAELSSISFLDDPKPIDLIFFFHKAIKKDLEFLVLGSAQLEKNGKLLMDFQKRFHLIYFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHKHEIEHFNKISHILDKMSRLHLSVSTTDSNVKEAGLRRYQHLCRKLQEMCKSMHTSLSNHINREEIEIWPIIRKFFTNQEQGKIMGCMLGRIRAEILQDMIPWLMASLTQEEQHVSMFLWSMATKNTMFGEWLGEWWDGYSLAKVTEGSNDAPPQPVEPMEIISKYLSEEILNELQEESSANKSINFLEKDRVGDNVELSNCNHNDNVKVHNAEKEDNQCSKSTNQFHDHDKHACNEVADFMNPVVNVGKSSKLCDESGRYDRLLKLSQDDLETVIRRVSRDSCLDPQKKSYIIQNLLMSRWIISQQISSTEVSIKNDEPEFPGKHPSYRDPLKLIYGCKHYKRNCKLFAPCCNQLHTCIHCHNDESDHSIDRKSITKMMCMKCLMIQPIGATCSTISCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMAHTCREKHLEDYCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTSFNYICPICSKSLGDMQVYFRMLDALLAEESISDEMSGQTQLQAILCNDCEKKGSTPFHWLYHKCPSCGSYNTRVL 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3489g00012 1263 CDD Hr-like 36 170 - -
Vium3489g00012 1263 CDD RING-H2_Pirh2-like 1155 1197 - -
Vium3489g00012 1263 SMART ring_2 1155 1196 IPR001841 -
Vium3489g00012 1263 SUPERFAMILY CHY zinc finger-like 1018 1083 IPR037274 GO:0008270
Vium3489g00012 1263 ProSiteProfiles Zinc finger CHY-type profile. 1020 1089 IPR008913 GO:0008270
Vium3489g00012 1263 FunFam Zinc finger protein-related isoform 1 1150 1199 - -
Vium3489g00012 1263 CDD Hr-like 612 758 - -
Vium3489g00012 1263 SUPERFAMILY Zinc hairpin stack 1092 1147 IPR037275 -
Vium3489g00012 1263 Pfam Zinc-ribbon 1202 1261 IPR039512 -
Vium3489g00012 1263 Gene3D nmb1532 protein domain like 606 778 - -
Vium3489g00012 1263 Gene3D nmb1532 protein domain like 32 190 - -
Vium3489g00012 1263 ProSiteProfiles Zinc finger CTCHY-type profile. 1091 1154 IPR017921 -
Vium3489g00012 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1148 1199 IPR013083 -
Vium3489g00012 1263 Gene3D - 1228 1263 - -
Vium3489g00012 1263 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 654 1263 - -
Vium3489g00012 1263 SUPERFAMILY RING/U-box 1153 1205 - -
Vium3489g00012 1263 ProSiteProfiles Zinc finger RING-type profile. 1155 1197 IPR001841 -
Vium3489g00012 1263 Pfam CHY zinc finger 1027 1101 IPR008913 GO:0008270
Vium3489g00012 1263 Pfam Ring finger domain 1154 1196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3489g00012 Vium-Chr3489 144497 154812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3489g00012 32 853 C2H2 Transcription Factor Family AT3G18290 33.521 1.82e-129 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3489g00012 K16276 - gmx:100802706 2245.31