Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3489g00002 ATGGAACCTCCGCTCGTCAACGACGCCACATTCTCTTCGGCCAACCCTTCCTTGTCCGAGATTTGGCCCTCGCAATTCCCCTCTTCCAACAAGAGACCCTCTTCTCTTCTTCTTCACAATCACTCTCCCAACAGTAACAAACACGTTAAGCTATCACCACCCTCAGAGACACACCAAAACGCTGCGTTGCGCCCTCCTCAACCCGACGCCACTTCCGTAGCCGCCGCCAACAACAACTCACCCCTTCAAACTCCCAAACCCAAGCAGGACTACATACACGTGCGAGCAAGAAGAGGCCAGGCCACCGATAGCCACAGTCTCGCCGAAAGAGCTCGTAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCCGGCTGTGGCAAGGTAATTGGTAAAGCGCTTGTCCTGGATGAGATTATTAACTACATCCAGTCCCTGCAGCGTCAGGTTGAGTTTCTTTCAATGAAGCTTGAGGCGGTTAATTCGAGATTGAGTCTTAGCCCTTCTATCGAATGTTTTCCCTCAAAAGAAGTTGCCACTCAGCCATTTGACCTTTCAGGAATAATATTTGGATCACAACCGGCAAGGGGATTTGCTCAAGGATCACAAGCTGGATGGCTGCATATGCAGATGGCTGGTGGTTTTGAGAAAGTAACATAA 672 0.4926 MEPPLVNDATFSSANPSLSEIWPSQFPSSNKRPSSLLLHNHSPNSNKHVKLSPPSETHQNAALRPPQPDATSVAAANNNSPLQTPKPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCGKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLSLSPSIECFPSKEVATQPFDLSGIIFGSQPARGFAQGSQAGWLHMQMAGGFEKVT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3489g00002 223 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 41 193 IPR024097 GO:0006355
Vium3489g00002 223 SMART finulus 106 156 IPR011598 GO:0046983
Vium3489g00002 223 Coils Coil 147 167 - -
Vium3489g00002 223 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983
Vium3489g00002 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 168 IPR036638 GO:0046983
Vium3489g00002 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983
Vium3489g00002 223 MobiDBLite consensus disorder prediction 8 86 - -
Vium3489g00002 223 CDD bHLH_AtBPE_like 90 173 - -
Vium3489g00002 223 Gene3D - 97 172 IPR036638 GO:0046983
Vium3489g00002 223 MobiDBLite consensus disorder prediction 1 88 - -
Vium3489g00002 223 FunFam Basic helix-loop-helix transcription factor 97 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3489g00002 Vium-Chr3489 23934 27059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3489g00002 1 38 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 58.537 3.60e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3489g00002 HLH 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3489g00002 - - gmx:100799646 326.635