Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3486g00005 ATGCAGATGCTCATAGACAAAGAAATGTCCAAACAGAAAGACTCCAAGCACTACCTACCAAATGTTGTAGCAAAACTAATGGGGCTTGAAACCCTTCCAAGGGGAGAGCCTAATTTATCTATGGAAAGAAGCTACAGAAGTGCTTATCCTCAACAAATGCATCGTCCTGTAGGCTTCCCATTCAGGGAAATACTTCATGAAGTTCACCCAAGCACAGAACAGGTTGCTTACAAAGAAATGTATGAAATATGGCAGCAATCTCAGAGAGCAAGGCATGCAAGTGGCAAGGTACCTGATAGAGGAAGATGGAGTGAAGATGTTGATGGGAAAAGAATGGCTCTCATTCGTCAGAAATTCATAGAAGCAAAACATCTGTCAACCGATGAGAGAATGCGTCAATCTAAACAATTTAAAGATGCCTTGGAAGTTCTAAGCTCCAACAGTGATCTCTTAATGAGGTTATTGGATTCTCAAAATGTTTATGAATTTTACTCAAGTCGACGTACTAATACAAAGCGCATTACTCTTATTAAACCTTCGAAGATGGACAACAATGACAAACCAGCCAGAAAGGAGAAAAGGAACAATAGACTAATTAAGAAATCACCAAATGTTGATCAAGCAGCTGGGTGGGAGAACAAGAATTCTGGAAACTCTCCAGATAGTCAGAAAGTTGATGAATCTCCAGTTCGAACCACTCGAATTGTGTTGCTGAAACCTAGCCCTGGGAGGACACCTGAGCAAAAGGATACGATTTCTCCAACAACAACATCACCACCAAATCTGAGAAGTGGTAATTGCCATCAGGGACCTGAATATGACGATGCAATAGAATCCATTAGAGTGGCAAAAGAGATCACACAGCAAATGCATAAGGATCTGTGGAGCTATCAAAAGGATAAAACTCCACATTATTCTTCAGTTATTTCCAATGGCTATTCTGATGATGAGAGTTCGTTCAACAAATCATATCACGAGTATGCATCAGCAAATTTCAGTGATTTGGAAGCTATGTCAATGTCATCGCTGCCAAGGCTTTCATGGGATTACAATTACATCAATGGCTGTAGCAGTCCTTATTCTACAATGTCCTTGGGTCGCGTGCCTTGCTCCCCTGAGTCATCAGTGTGCAGAGAGGCGAAGAAAAGGCTTTCTGAAAGATGGACTATGATGACATCAGATAATAAGGGTCCTCAAGAACAAACGACAGTGAGAAGAAACTCTACCTTGGGTGAGATGCTTTCTCTTACCCACATGAAGAAATCTGCAACATCTGTGGTTGAGAGTATTCAAGAGGACCAAGAACCCGGAAAATCTGTTTCTTGCAGTCGTTCTTTCAATGCAGAAATAAGCAATCAGGGCTATCCTAAAAATCTTCCCAGGTCAAATTCTGTGTCTGCATCCTCTACTGTCAATGGAACTGATCTCACAGTTCAAGTTGCTGCTCCAAAAACTGGCAAATCACAAGCCTCCAGGGCACAGACAAAGTCAAAGAGGAGATCAACGTTTAAAGAAAAAGTAGCCAGTCTCTTGTTCTCAAAGAGTAAGAAATCAACCAAGGAAAAGCCAAGTTCTCCTCAATCTAAAGATGCATCCCAACCCGCTCCTATCGTCACTGAAGCATTAGTTCTTCCACATGAAGTCCTTAGGGATGATGAGTCTCAAATCATCAATGTGGATAGTTTTGAAGAGTTTTCTCTTGTAGCTCTATGTGAATCATCAGAGAAAACTTCCACAAATTCAGTCGCTAACAGACAAGAAGAAGACATGATTACACTAGAGCCTGGATTGGCAGTGGCAGGGTCCATGATGCTAGAGATTAATTCGAGCGAAAGCCCAGATCAGCCTAGTCCATTCTCAGTGTTACAACCTCCATTTGAAGATGATCAACTAGGATCACAGGTGGAACTGAAGTCCAATTTAATTGACAAATCACCGCCTATAGAATCAATAGCTAGGACCCTATCATGGGATGATTCTTCTGCAGAAGTGGCAAGCCCCCATCTATTAAAACCCTTAACGGTTCCTTCCTTGGACTCCAAGATAGAGGATAAAGAGTGGCTTCTCTTGGTCCACAACCTACTATCAGCAGCTGGATTTGATGACCAGCAGCAATATGACTCTTTTTACACCAGATGGTATTCCCTTGAAAGCCCATTGGACCCGTCATTGAGGGACACATTACTCAATGAGAAGGAGCCTCAGCCAATGCACGAGGGCAGAAGAAGGAAGATGAGATCAAATCATAAACTTGTTTTTGATTATATCAATGCTACACTATTGGAACTTGTTGGTTATGGGTCAGAAAAGTTCTTAAAGGGCAGTGGGAACCACTGCAGGGTCCTAATCCAAGAGAGTGCACCGGAATCTACCTTGTTGGTGGACCACATTGTGGCCAAAATAAAGGAATTAATGGCAAGTGGGGTGAGGTGTGAGTGGGACAGCAACAGCCTGGTGGTAGAAAATGTTGTCAGAAAAGAGATTGTGCAGATAGGGTGGGTGGACCTTATGAAATTGGAGATAGACGTTTTGGGAAAGGAGATAGAGGGGGACTTGATTCAAGAGCTTGTGGAGAATGCAGTGGTTGATTTTAATTTTCAAATTAAATAA 2610 0.4211 MQMLIDKEMSKQKDSKHYLPNVVAKLMGLETLPRGEPNLSMERSYRSAYPQQMHRPVGFPFREILHEVHPSTEQVAYKEMYEIWQQSQRARHASGKVPDRGRWSEDVDGKRMALIRQKFIEAKHLSTDERMRQSKQFKDALEVLSSNSDLLMRLLDSQNVYEFYSSRRTNTKRITLIKPSKMDNNDKPARKEKRNNRLIKKSPNVDQAAGWENKNSGNSPDSQKVDESPVRTTRIVLLKPSPGRTPEQKDTISPTTTSPPNLRSGNCHQGPEYDDAIESIRVAKEITQQMHKDLWSYQKDKTPHYSSVISNGYSDDESSFNKSYHEYASANFSDLEAMSMSSLPRLSWDYNYINGCSSPYSTMSLGRVPCSPESSVCREAKKRLSERWTMMTSDNKGPQEQTTVRRNSTLGEMLSLTHMKKSATSVVESIQEDQEPGKSVSCSRSFNAEISNQGYPKNLPRSNSVSASSTVNGTDLTVQVAAPKTGKSQASRAQTKSKRRSTFKEKVASLLFSKSKKSTKEKPSSPQSKDASQPAPIVTEALVLPHEVLRDDESQIINVDSFEEFSLVALCESSEKTSTNSVANRQEEDMITLEPGLAVAGSMMLEINSSESPDQPSPFSVLQPPFEDDQLGSQVELKSNLIDKSPPIESIARTLSWDDSSAEVASPHLLKPLTVPSLDSKIEDKEWLLLVHNLLSAAGFDDQQQYDSFYTRWYSLESPLDPSLRDTLLNEKEPQPMHEGRRRKMRSNHKLVFDYINATLLELVGYGSEKFLKGSGNHCRVLIQESAPESTLLVDHIVAKIKELMASGVRCEWDSNSLVVENVVRKEIVQIGWVDLMKLEIDVLGKEIEGDLIQELVENAVVDFNFQIK 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3486g00005 869 Pfam Protein of unknown function (DUF3741) 116 159 IPR022212 -
Vium3486g00005 869 PANTHER M REDUCTASE II SUBUNIT GAMMA, PUTATIVE (DUF3741)-RELATED 1 865 - -
Vium3486g00005 869 MobiDBLite consensus disorder prediction 481 536 - -
Vium3486g00005 869 MobiDBLite consensus disorder prediction 246 265 - -
Vium3486g00005 869 Pfam Domain of unknown function (DUF4378) 691 858 IPR025486 -
Vium3486g00005 869 MobiDBLite consensus disorder prediction 451 470 - -
Vium3486g00005 869 MobiDBLite consensus disorder prediction 208 226 - -
Vium3486g00005 869 MobiDBLite consensus disorder prediction 179 193 - -
Vium3486g00005 869 MobiDBLite consensus disorder prediction 174 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3486g00005 Vium-Chr3486 13058 19017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3486g00005 1 864 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 36.175 2.38e-132 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3486g00005 - - gmx:100787955 1226.85