Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3486g00003 ATGCAGATGCTCATAGACAAAGAAATGTCCAAACAGAAAGACTCCAAGCACTACCTACCAAATGTTGTAGCAAAACTAATGGGGCTTGAAACCCTTCCAAGGGGAGAGCCTAATTTATCTATGGAAAGAAGCTACAGAAGTGCTTATCCTCAACAAATGCATCGTCCTGTAGGCTTCCCATTCAGGCATTGGCAGCAAGAAGATAGGTTTATGGAGAGGGAAATACTTCATGAAGTTCACCCAAGCACAGAACAGGTTGCTTACAAAGAAATGTATGAAATATGGCAGCAATCTCAGAGAGCAAGGCATGCAAGTGGCAAGGTACCTGATAGAGGAAGATGGAGTGAAGATGTTGATGGGAAAAGAATGGCTCTCATTCGTCAGAAATTCATAGAAGCAAAACATCTGTCAACCGATGAGAGAATGCGTCAATCTAAACAATTTAAAGATGCCTTGGAAGTTCTAAGCTCCAACAGTGATCTCTTAATGAGGTTATTGGATTCTCAAAATGTTTATGAATTTTACTCAAGTCGACGTACTAATACAAAGCGCATTACTCTTATTAAACCTTCGAAGATGGACAACAATGACAAACCAGCCAGAAAGGAGAAAAGGAACAATAGACTAATTAAGAAATCACCAAATGTTGATCAAGCAGCTGGGTGGGAGAACAAGAATTCTGGAAACTCTCCAGATAGTCAGAAAGTTGATGAATCTCCAGTTCGAACCACTCGAATTGTGTTGCTGAAACCTAGCCCTGGGAGGACACCTGAGCAAAAGGATACAATTTCTCCAACAACAACATCACCACCAAATCTGAGAAGTGGTAATTGCCATCAGGGACCTGAATATGACGATGCAATAGAATCCATTAGAGTGGCAAAAGAGATCACACAGCAAATGCATAAGGATCTGTGGAGCTATCAAAAGGATAAAACTCCACATTATTCTTCAGTTATTTCCAATGGCTATTCTGATGATGAGAGTTCGTTCAACAAATCATATCACGAGTATGCATCAGCAAATTTCAGTGATTTGGAAGCTATGTCAATGTCATCGCTGCCAAGGCTTTCATGGGATTACAATTACATCAATGGCTGTAGCAGTCCTTATTCTACAATGTCCTTGGGTCGCGTGCCTTGCTCCCCTGAGTCATCAGTGTGCAGAGAGGCGAAGAAAAGGCTTTCTGAAAGATGGACTATGATGACATCAGATAATAAGGGTCCTCAAGAACAAACGACAGTGAGAAGAAACTCTACCTTGGGTGAGATGCTTTCTCTTACCCACATGAAGAAATCTGCAACATCTGTGGTTGAGAGTATTCAAGAGGACCAAGAACCCGGAAAATCTGTTTCTTGCAGTCGTTCTTTCAATGCAGAAATAAGCAATCAGGGCTATCCTAAAAATCTTCCCAGGTCAAATTCTGTGTCTGCATCCTCTACTGTCAATGGAACTGATCTCACAGTTCAAGTTGCTGCTCCAAAAACTGGCAAATCACAAGCCTCCAGGGCACAGACAAAGTCAAAGAGGAGATCAACGTTTAAAGAAAAAGTAGCCAGTCTCTTGTTCTCAAAGAGTAAGAAATCAACCAAGGAAAAGCCAAGTTCTCCTCAATCTAAAGATGCATCCCAACCCGCTCCTATCGTCACTGAAGCATTAGTTCTTCCACATGAAGTCCTTAGGGATGATGAGTCTCAAATCATCAATGTGGATAGTTTTGAAGAGTTTTCTCTTGTAGCTCTATGTGAATCATCAGAGAAAACTTCCACAAATTCAGTCGCTAACAGACAAGAAGAAGACATGATTACACTAGAGCCTGGATTGGCAGTGGCAGGGTCCATGATGCTAGAGATTAATTCGAGCGAAAGCCCAGATCAGCCTAGTCCATTCTCAGTGTTACAACCTCCATTTGAAGATGATCAACTAGGATCACAGGTGGAACTGAAGTCCAATTTAATTGACAAATCACCGCCTATAGAATCAATAGCTAGGACCCTATCATGGGATGATTCTTCTGCAGAAGTGGCAAGCCCCCATCTATTAAAACCCTTAACGGTTCCTTCCTTGGACTCCAAGATAGAGGATAAAGAGTGGCTTCTCTTGGTCCACAACCTACTATCAGCAGCTGGATTTGATGACCAGCAGCAATATGACTCTTTTTACACCAGATGGTATTCCCTTGAAAGCCCATTGGACCCGTCATTGAGGGACACATTACTCAATGAGAAGGAGCCTCAGCCAATGCACGAGGGCAGAAGAAGGAAGATGAGATCAAATCATAAACTTGTTTTTGATTATATCAATGCTACACTATTGGAACTTGTTGGTTATGGGTCAGAAAAGTTCTTAAAGGGCAGTGGGAACCACTGCAGGGTCCTAATCCAAGAGAGTGCACCGGAATCTACCTTGTTGGTGGACCACATTGTGGCCAAAATAAAGGAATTAATGGCAAGTGGGGTGAGGTGTGAGTGGGACAGCAACAGCCTGGTGGTAGAAAATGTTGTCAGAAAAGAGATTGTGCAGATAGGGTGGGTGGACCTTATGAAATTGGAGATAGACGTTTTGGGAAAGGAGATAGAGGGGGACTTGATTCAAGAGCTTGTGGAGAATGCAGTGGTTGATTTTAATTTTCAAATTAAATAA 2643 0.4211 MQMLIDKEMSKQKDSKHYLPNVVAKLMGLETLPRGEPNLSMERSYRSAYPQQMHRPVGFPFRHWQQEDRFMEREILHEVHPSTEQVAYKEMYEIWQQSQRARHASGKVPDRGRWSEDVDGKRMALIRQKFIEAKHLSTDERMRQSKQFKDALEVLSSNSDLLMRLLDSQNVYEFYSSRRTNTKRITLIKPSKMDNNDKPARKEKRNNRLIKKSPNVDQAAGWENKNSGNSPDSQKVDESPVRTTRIVLLKPSPGRTPEQKDTISPTTTSPPNLRSGNCHQGPEYDDAIESIRVAKEITQQMHKDLWSYQKDKTPHYSSVISNGYSDDESSFNKSYHEYASANFSDLEAMSMSSLPRLSWDYNYINGCSSPYSTMSLGRVPCSPESSVCREAKKRLSERWTMMTSDNKGPQEQTTVRRNSTLGEMLSLTHMKKSATSVVESIQEDQEPGKSVSCSRSFNAEISNQGYPKNLPRSNSVSASSTVNGTDLTVQVAAPKTGKSQASRAQTKSKRRSTFKEKVASLLFSKSKKSTKEKPSSPQSKDASQPAPIVTEALVLPHEVLRDDESQIINVDSFEEFSLVALCESSEKTSTNSVANRQEEDMITLEPGLAVAGSMMLEINSSESPDQPSPFSVLQPPFEDDQLGSQVELKSNLIDKSPPIESIARTLSWDDSSAEVASPHLLKPLTVPSLDSKIEDKEWLLLVHNLLSAAGFDDQQQYDSFYTRWYSLESPLDPSLRDTLLNEKEPQPMHEGRRRKMRSNHKLVFDYINATLLELVGYGSEKFLKGSGNHCRVLIQESAPESTLLVDHIVAKIKELMASGVRCEWDSNSLVVENVVRKEIVQIGWVDLMKLEIDVLGKEIEGDLIQELVENAVVDFNFQIK 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3486g00003 880 MobiDBLite consensus disorder prediction 219 237 - -
Vium3486g00003 880 MobiDBLite consensus disorder prediction 190 204 - -
Vium3486g00003 880 PANTHER M REDUCTASE II SUBUNIT GAMMA, PUTATIVE (DUF3741)-RELATED 1 876 - -
Vium3486g00003 880 Pfam Domain of unknown function (DUF4378) 702 869 IPR025486 -
Vium3486g00003 880 MobiDBLite consensus disorder prediction 189 283 - -
Vium3486g00003 880 Pfam Protein of unknown function (DUF3741) 127 170 IPR022212 -
Vium3486g00003 880 MobiDBLite consensus disorder prediction 492 547 - -
Vium3486g00003 880 MobiDBLite consensus disorder prediction 257 276 - -
Vium3486g00003 880 MobiDBLite consensus disorder prediction 462 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3486g00003 Vium-Chr3486 13058 19021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3486g00003 1 875 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 36.156 4.53e-132 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3486g00003 - - gmx:100787955 1258.43