Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3485g00008 ATGGGAGAACTGAAGCTACTGGGAGTTTGGCCTAGTTCATACGTTTACAGGATCATATGGGCGTTAGAACTGAAGGGCATAAAGTATGAGCATGTACAAGGAGAATTCCACAACCCTGATTTCAGTGATTTGCTACTGAAGTATAACCCAGTTTACAAAAAGGTTCCTGTCCTTGTTGTTGATGGAAAGCCAATTGCAGAATCCACTGTCATTCTTGAATACATAGAGGAAACATGGCCACAGCCACCCATGCTTCCACAGGACCCATATGAGAGGGCCGTGGCACGGTTTTGGGTGAGTTTTGCTGAAGAAAAGAGTACTTCGTTTATGTCATTCTTTGTGGCTGTTGGAGAAGAGTTTCAGAAGGCAACAAAGGAAGTAAGAGAAGTGCTTAAAGTATTAGAAGAAACCATTGGGGACAAAAAGTATTTTGGTGGTGAAGAAATTGGAGTTTTGGACATAACCTTGGGATGGATACCCTTGTTCTTTGGAGTCATTGAAGATATTGTTGGTGTAAAGGTGTTGGTAGTTGATGATTTTCCTCGCTTGTTTACTTGGATTCGGAACTTCAGTGAGCACCCCTCTATCAGAACGAACTTTCCAAGTCACCATGAGTTGTTTGGTTATTACAAGCAAAAGAGAGACACTATTATTCCACCCAATACAGCATGA 672 0.4182 MGELKLLGVWPSSYVYRIIWALELKGIKYEHVQGEFHNPDFSDLLLKYNPVYKKVPVLVVDGKPIAESTVILEYIEETWPQPPMLPQDPYERAVARFWVSFAEEKSTSFMSFFVAVGEEFQKATKEVREVLKVLEETIGDKKYFGGEEIGVLDITLGWIPLFFGVIEDIVGVKVLVVDDFPRLFTWIRNFSEHPSIRTNFPSHHELFGYYKQKRDTIIPPNTA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3485g00008 223 Pfam Glutathione S-transferase, N-terminal domain 3 76 IPR004045 -
Vium3485g00008 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 205 IPR045073 -
Vium3485g00008 223 CDD GST_N_Tau 4 79 - -
Vium3485g00008 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Vium3485g00008 223 Pfam Glutathione S-transferase, C-terminal domain 123 188 - -
Vium3485g00008 223 SFLD Main (cytGST) 2 217 - -
Vium3485g00008 223 Gene3D - 88 219 - -
Vium3485g00008 223 FunFam Tau class glutathione S-transferase 85 219 - -
Vium3485g00008 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Vium3485g00008 223 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Vium3485g00008 223 SUPERFAMILY Thioredoxin-like 4 104 IPR036249 -
Vium3485g00008 223 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Vium3485g00008 223 CDD GST_C_Tau 89 212 IPR045074 GO:0004364|GO:0006749
Vium3485g00008 223 Gene3D Glutaredoxin 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3485g00008 Vium-Chr3485 57072 58302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3485g00008 3 217 Glutathione S-transferase Gene Family AT2G29420 40.741 1.81e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3485g00008 K00799 - gmx:100500361 400.208