Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3481g00007 ATGAGTAACAAGGAGCGAGTTCCATCTTTAATATGCTTCTATATTCTGTTTTGGACATTTTTGGTTCATCACATGGTGCTCAGGGTTTCTGGAAATGCAGAAGGTGATGCCCTTACAGTATTCAAGAACAAAGTGATAGATCCTACTGGTGCTCTTAGTAATTGGAATCCTAATATTTTAACTCCTTGCACATGGTTTCATGTTGTTTGCAACGGTGAAAATAGCGTAATCCGTTTGGATCTTGGAAATGCAGAACTTTCCGGTCAACTTGTTCCAGAGCTTGGCCAGCTCCCAAATTTGGCATATCTGGAACTTCATAACAATAATATAACTGGGGAGATCCCAAATGTGCTTGGAAATTTGACAAACTTGCTGAGTTTGGATCTTTACTCGAACAACATTACTGGCCAAATTCCAGAAGAATTAGGCAATCTTAAAAAACTACAATCCCTTTTTAGCAATAATACTTACTTGGTGCAAGCCATTCCAATTTCACCACCCGCCACACAGAAACAAAATCCTTCAGGTAATAGTTTCAGATCTATTGGAGTCATTGCTGGAGGAGTTGCTGTAGGCGCTGCACTGTTGTTTGCAGCTCCAGTAATTGCATTTGTTTACTGCAAAAGAAGGAAGCCACCAGATTATTTCTTTGACGTTGCAGCTGAGGAGGACCCTGAAGTTAACTTTGGTCAACTTAAAAGGTTTTCACTGCATGAACTGCTAGTTGCAACAGATGGTTTTAATAACAAAAACATTATTGGTAAAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAGTGGTGATCTAGTTGCAGTAAAAAGACTTAACCAAGAACGTATCCGGAGTGAGGAGAAACAATTTCAAACAGAAGTGGAAATGATCAGCTTGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACAACTACTGAAAGATTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGATTCATGTTTACGAGATCGACCAGAATCACAACCACCACTTCAATGGCCAGTTCGGAAGCGTATTGCTCTGGGAGCAGCTAAGGGGCTTGCATATCTGCATGATCATTGTGACCCGAAGATTATTCATCGTGATATCAAAGCTGCTAATATATTATTGGATGAGGACTTTGAAGCGGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAGAAATACTCATGTTACTACTGCTGTACGTGGGACACTTGGCCATATACCACCAGAGTATCTTTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGCGTGATGCTTCTTGAGATAATAACTGGACAGAGGGCTTTCAATTTAGCCCGACTTGCCATTAGTGATGAGGTTATGTTGCTCGAATGGGTGAAAGCACTTCTGAAGGAGCAGAAGTTAGAGACACTGGTGGATGAAGATTTACAGGGAGATTATGATGGGGGGGAACTAGAGAAGTTAATTCAAATAGCTTTGCTGTGCACACAAAGTTCCCCTTTGGATAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAAGGGCAAGGTTTGGAAGAAAAGTGGGACCAATGGGGGAAGAAAGAGGATATGATCCAAAAAAATTACAACCCCTTCAATCTCTACGATGGTTACGACTCAATTTCAAATATTCCACCAGATGAACTGTCTGGTCCTAGATGA 1707 0.4077 MSNKERVPSLICFYILFWTFLVHHMVLRVSGNAEGDALTVFKNKVIDPTGALSNWNPNILTPCTWFHVVCNGENSVIRLDLGNAELSGQLVPELGQLPNLAYLELHNNNITGEIPNVLGNLTNLLSLDLYSNNITGQIPEELGNLKKLQSLFSNNTYLVQAIPISPPATQKQNPSGNSFRSIGVIAGGVAVGAALLFAAPVIAFVYCKRRKPPDYFFDVAAEEDPEVNFGQLKRFSLHELLVATDGFNNKNIIGKGGFGKVYKGRLTSGDLVAVKRLNQERIRSEEKQFQTEVEMISLAVHRNLLRLIGFCMTTTERLLVYPFMVNGSVDSCLRDRPESQPPLQWPVRKRIALGAAKGLAYLHDHCDPKIIHRDIKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTLGHIPPEYLSTGKSSEKTDVFGYGVMLLEIITGQRAFNLARLAISDEVMLLEWVKALLKEQKLETLVDEDLQGDYDGGELEKLIQIALLCTQSSPLDRPKMSEVVRMLEGQGLEEKWDQWGKKEDMIQKNYNPFNLYDGYDSISNIPPDELSGPR 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3481g00007 568 Pfam Leucine rich repeat 98 152 IPR001611 GO:0005515
Vium3481g00007 568 ProSitePatterns Protein kinases ATP-binding region signature. 253 275 IPR017441 GO:0005524
Vium3481g00007 568 ProSiteProfiles Protein kinase domain profile. 247 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3481g00007 568 Gene3D Phosphorylase Kinase; domain 1 216 323 - -
Vium3481g00007 568 Gene3D Ribonuclease Inhibitor 31 184 IPR032675 -
Vium3481g00007 568 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vium3481g00007 568 SMART serkin_6 247 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3481g00007 568 FunFam Somatic embryogenesis receptor-like kinase 1 324 541 - -
Vium3481g00007 568 Pfam Protein kinase domain 248 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3481g00007 568 SUPERFAMILY L domain-like 34 165 - -
Vium3481g00007 568 SUPERFAMILY Protein kinase-like (PK-like) 228 523 IPR011009 -
Vium3481g00007 568 Gene3D Transferase(Phosphotransferase) domain 1 324 541 - -
Vium3481g00007 568 FunFam Somatic embryogenesis receptor kinase 1 216 323 - -
Vium3481g00007 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 370 382 IPR008271 GO:0004672|GO:0006468
Vium3481g00007 568 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 531 - -
Vium3481g00007 568 FunFam Somatic embryogenesis receptor kinase 1 30 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3481g00007 Vium-Chr3481 20620 26639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3481g00007 9 568 Receptor kinase-like Gene Family AT1G71830 61.760 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium3481g00007 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3481g00007 K13416 K13418 gmx:100804180 739.954