Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3481g00006 ATGAGTAACAAGGAGCGAGTTCCATCTTTAATATGCTTCTATATTCTGTTTTGGACATTTTTGGTTCATCACATGGTGCTCAGGGTTTCTGGAAATGCAGAAGGTGATGCCCTTACAGTATTCAAGAACAAAGTGATAGATCCTACTGGTGCTCTTAGTAATTGGAATCCTAATATTTTAACTCCTTGCACATGGTTTCATGTTGTTTGCAACGGTGAAAATAGCGTAATCCGTTTGGATCTTGGAAATGCAGAACTTTCCGGTCAACTTGTTCCAGAGCTTGGCCAGCTCCCAAATTTGGCATATCTGGAACTTCATAACAATAATATAACTGGGGAGATCCCAAATGTGCTTGGAAATTTGACAAACTTGCTGAGTTTGGATCTTTACTCGAACAACATTACTGGCCAAATTCCAGAAGAATTAGGCAATCTTAAAAAACTACAATCCCTGCGCCTCAACAAAAACAGCTTGTCAGGAAAGATTCCTATGGGTTTGACCAATATTAGTACACTGATGGTTCTTGACTTATCGTACAACAACTTAACAGGGACTGTCCCAGCCAATGGTTCATTTTCACGTTTTACTCCCATCAGTTTTAGCAATAATACTTACTTGGTGCAAGCCATTCCAATTTCACCACCCGCCACACAGAAACAAAATCCTTCAGGTAATAGTTTCAGATCTATTGGAGTCATTGCTGGAGGAGTTGCTGTAGGCGCTGCACTGTTGTTTGCAGCTCCAGTAATTGCATTTGTTTACTGCAAAAGAAGGAAGCCACCAGATTATTTCTTTGACGTTGCAGCTGAGGAGGACCCTGAAGTTAACTTTGGTCAACTTAAAAGGTTTTCACTGCATGAACTGCTAGTTGCAACAGATGGTTTTAATAACAAAAACATTATTGGTAAAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAGTGGTGATCTAGTTGCAGTAAAAAGACTTAACCAAGAACGTATCCGGAGTGAGGAGAAACAATTTCAAACAGAAGTGGAAATGATCAGCTTGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACAACTACTGAAAGATTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGATTCATGTTTACGAGATCGACCAGAATCACAACCACCACTTCAATGGCCAGTTCGGAAGCGTATTGCTCTGGGAGCAGCTAAGGGGCTTGCATATCTGCATGATCATTGTGACCCGAAGATTATTCATCGTGATATCAAAGCTGCTAATATATTATTGGATGAGGACTTTGAAGCGGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAGAAATACTCATGTTACTACTGCTGTACGTGGGACACTTGGCCATATACCACCAGAGTATCTTTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGCGTGATGCTTCTTGAGATAATAACTGGACAGAGGGCTTTCAATTTAGCCCGACTTGCCATTAGTGATGAGGTTATGTTGCTCGAATGGGTGAAAGCACTTCTGAAGGAGCAGAAGTTAGAGACACTGGTGGATGAAGATTTACAGGGAGATTATGATGGGGGGGAACTAGAGAAGTTAATTCAAATAGCTTTGCTGTGCACACAAAGTTCCCCTTTGGATAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAAGGGCAAGGTTTGGAAGAAAAGTGGGACCAATGGGGGAAGAAAGAGGATATGATCCAAAAAAATTACAACCCCTTCAATCTCTACGATGGTTACGACTCAATTTCAAATATTCCACCAGATGAACTGTCTGGTCCTAGATGA 1851 0.409 MSNKERVPSLICFYILFWTFLVHHMVLRVSGNAEGDALTVFKNKVIDPTGALSNWNPNILTPCTWFHVVCNGENSVIRLDLGNAELSGQLVPELGQLPNLAYLELHNNNITGEIPNVLGNLTNLLSLDLYSNNITGQIPEELGNLKKLQSLRLNKNSLSGKIPMGLTNISTLMVLDLSYNNLTGTVPANGSFSRFTPISFSNNTYLVQAIPISPPATQKQNPSGNSFRSIGVIAGGVAVGAALLFAAPVIAFVYCKRRKPPDYFFDVAAEEDPEVNFGQLKRFSLHELLVATDGFNNKNIIGKGGFGKVYKGRLTSGDLVAVKRLNQERIRSEEKQFQTEVEMISLAVHRNLLRLIGFCMTTTERLLVYPFMVNGSVDSCLRDRPESQPPLQWPVRKRIALGAAKGLAYLHDHCDPKIIHRDIKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTLGHIPPEYLSTGKSSEKTDVFGYGVMLLEIITGQRAFNLARLAISDEVMLLEWVKALLKEQKLETLVDEDLQGDYDGGELEKLIQIALLCTQSSPLDRPKMSEVVRMLEGQGLEEKWDQWGKKEDMIQKNYNPFNLYDGYDSISNIPPDELSGPR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3481g00006 616 FunFam Somatic embryogenesis receptor-like kinase 1 372 589 - -
Vium3481g00006 616 Gene3D Phosphorylase Kinase; domain 1 264 371 - -
Vium3481g00006 616 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Vium3481g00006 616 SMART serkin_6 295 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3481g00006 616 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Vium3481g00006 616 ProSiteProfiles Protein kinase domain profile. 295 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3481g00006 616 Pfam Protein kinase domain 296 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3481g00006 616 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vium3481g00006 616 FunFam Somatic embryogenesis receptor kinase 1 30 223 - -
Vium3481g00006 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 579 - -
Vium3481g00006 616 SUPERFAMILY L domain-like 34 203 - -
Vium3481g00006 616 FunFam Somatic embryogenesis receptor kinase 1 264 371 - -
Vium3481g00006 616 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Vium3481g00006 616 Gene3D Transferase(Phosphotransferase) domain 1 372 589 - -
Vium3481g00006 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vium3481g00006 616 SUPERFAMILY Protein kinase-like (PK-like) 276 571 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3481g00006 Vium-Chr3481 20620 26640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3481g00006 5 616 Receptor kinase-like Gene Family AT4G33430 63.759 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium3481g00006 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3481g00006 K13416 - gmx:100804180 887.871