Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3481g00004 ATGAAGCAAGTGATTTCATCTTTCAGGTGTTTGTTTCTTCTTTGTGCATTTTTAGTGCTTGACTTCATGGTCAAGGTTTCTGGCAACCAAGAAGGTGATGCCCTGTCTGCATTGAGGGGCAATATGAATGATCCCAATAATGTTCTTCAAAGTTGGGATTCTACCCTTGTCAATCCTTGCACATGGTTTCATGTTACATGCAATAATGACAATAGCGTGATCCGTGTTGATCTTGGAAATGCAAATCTTTCGGGTGAGCTTGTTGCACAGCTTGGTCAACTCCCAAATTTGCAATACTTGGAACTTTATAGTAATAATATAACTGGAAAAATTCCAGAGGAGCTTGGGAACTTGACAAACTTGGTGAGCTTGGATCTTTACTCGAACAAAATTACTGGTCAAATTCCAGTCGAATTAGCCAACCTTAAAAAACTACGTTTCCTGCGTCTCAACAATAACAGCTTGTCAGGAAAAATTCCTATGCCTCTGACCAATGTCGATAAACTGCAAGTGCTTGATTTATCGAACAACAACTTAACAGGAGATGTCCCAACCAATGGTTCTTTTTCATATTTTACTCCCATCAGTTTTAGGAGTAACCCCCTATTGAATAATATAGACACTCAATCTCCACCAGCTGCTGCACCACCAGCAAATTCTTCAGGTAAGAATAACCGTGTTATTGGAATCATTGCTGGAGCAGTTGCTGTGGGTGCTGCACTGTTGTTTGCAGCTCCTGTGATTACATTTGTTTATTGTAAAAGAAGGAAACCACATGACTTTTTCTCTGATGTTGCAGCTGAGGAGGATCCTGAAGTTCATCTTGGTCAGCTTAGAAGGTTTTCATTGCGCGAACTGCAAGTTGCAACAGATAGCTTTAACAACAAAAACATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGAGATCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGAACCCAGGGTGGGGAGATGCAATTTCAAACGGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATCTGCTTCGCCTGCATGGTTTTTGCATGACAACTACTGAACGTTTGCTTGTGTACCCTTTCATGGTTAATGGAAGTGTAGCTTCATGTTTACGAGATCGTCCGGAAGCACAACCACCACTTGAATGGTCAAAACGGAAGGGTATTGCTCTAGGAGCTGCAAGGGGCCTTGCTTATTTGCATGATCATTGTGATCCAAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTAATGAATTACAAAGATACTCATGTTACTACTGCGGTACGTGGTACTATTGGCCACATTGCTCCTGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTCGATTGGGTAAAAGGACTATTGAAAGAAAAGAGGTTGAAGACACTGGTGGATGCAGATTTGGATGGAAAATATGATGAGGAGGAAGTAGAAGAGTTGATCCAAGTGGCCTTGCTATGCACACAAAGCTCCTCTTTCGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGAAGGTTTGGCAGAAAAATGGGAAAAATGGTGGCAAAAAGAGGATATAATCCAACAAAATTTTGACCCCTCCAGTCTCCACCATGCTTACTGGCCATTATTAAACTCATCCTCAAATATTCCCCCAGATGAACTGTCAGGACCTAGATGA 1857 0.413 MKQVISSFRCLFLLCAFLVLDFMVKVSGNQEGDALSALRGNMNDPNNVLQSWDSTLVNPCTWFHVTCNNDNSVIRVDLGNANLSGELVAQLGQLPNLQYLELYSNNITGKIPEELGNLTNLVSLDLYSNKITGQIPVELANLKKLRFLRLNNNSLSGKIPMPLTNVDKLQVLDLSNNNLTGDVPTNGSFSYFTPISFRSNPLLNNIDTQSPPAAAPPANSSGKNNRVIGIIAGAVAVGAALLFAAPVITFVYCKRRKPHDFFSDVAAEEDPEVHLGQLRRFSLRELQVATDSFNNKNILGRGGFGKVYKGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLHGFCMTTTERLLVYPFMVNGSVASCLRDRPEAQPPLEWSKRKGIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKRLKTLVDADLDGKYDEEEVEELIQVALLCTQSSSFERPKMSEVVRMLEGEGLAEKWEKWWQKEDIIQQNFDPSSLHHAYWPLLNSSSNIPPDELSGPR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3481g00004 618 Gene3D Phosphorylase Kinase; domain 1 262 369 - -
Vium3481g00004 618 Gene3D Transferase(Phosphotransferase) domain 1 370 587 - -
Vium3481g00004 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 578 - -
Vium3481g00004 618 Gene3D Ribonuclease Inhibitor 27 210 IPR032675 -
Vium3481g00004 618 FunFam Somatic embryogenesis receptor kinase 1 27 214 - -
Vium3481g00004 618 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Vium3481g00004 618 ProSiteProfiles Protein kinase domain profile. 293 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3481g00004 618 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Vium3481g00004 618 Pfam Leucine Rich Repeat 168 182 IPR001611 GO:0005515
Vium3481g00004 618 FunFam Somatic embryogenesis receptor-like kinase 1 370 588 - -
Vium3481g00004 618 FunFam Somatic embryogenesis receptor kinase 1 262 369 - -
Vium3481g00004 618 SUPERFAMILY Protein kinase-like (PK-like) 272 568 IPR011009 -
Vium3481g00004 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Vium3481g00004 618 SMART serkin_6 293 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3481g00004 618 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Vium3481g00004 618 Pfam Protein kinase domain 294 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3481g00004 618 SUPERFAMILY L domain-like 30 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3481g00004 Vium-Chr3481 7844 14206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3481g00004 10 618 Receptor kinase-like Gene Family AT4G33430 70.821 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium3481g00004 Pkinase 7.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3481g00004 K13416 - gmx:100804180 1021.15