Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3478g00030 ATGACTTTCAACTTCATAACTCCAGTAATGAATCATGGTGTGGTAAAACAATTAGACTCCGATGACCTATTGCCACTACCGACTGATATGAGTCCTTCTTCTTGTCATGATGTGATTTTGTCCTGCTGGCAAGCTCAACTGAGTAACAATGGCTCTACTCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATACCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGTGGGGCCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAACAAGGTTCAGTGAATTGGGATGGGTATTTACTTGCATTATCCTTGGGGCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATAGTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTTCGAGTGAACTTAGCAGAGCGTTCAAAATTTACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAACTTATGTAATAGTTTCCATGATATGTGGAGCCTGCCTCTACAAATTGGAGTGGCTCTCTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATAGCACAATTGATTGCAAGTGCTACTGAGCAGATGATGAAGGAGAAAGATGAAAGGATTCGTAAGACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTACGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGATACAAGATCTTTGGAAGTCAAACACTTAGCTACACGAAAGTACTTGGATGCGTGGTGTGTTTTCTTTTGGGCTACAACACCGACTCTCTTCTCTCTTTTCACTTTTGGACTCTATGCACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACGTGTCTTGCATTGTTCAACACCCTTATTTCACCACTAAATTCATTCCCTTGGGTAATAAATGGATTGATTGATGCCATCATATCTTCCAGACGGTTGAGTAGGTTTCTCGCTTGTCCTGAAGATAAATTTAAAGTGGGAAACAAAAGTTCCTGTCCACCATCATTCCTAAGTGAACAGCCTAATTCTGTACAAGGTTTGGGTGTATTTATCCAAGATGCATGTTGTACTTGGTCAAGTAGTGAGGAACAAGCATTAAATATGGTGTTGAATCGTGTGACTCTAAGTGTGGCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATCCTTGGAGAAATGCAGCTTGTTCATGGCTCTATTTATTCCAATGAATCCATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACGGTGCGCGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTATACTGATACACTGAAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGTGAGAAAGGAGTTAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCATTGTATCATGACTCAGCTGTTGTTATGCTTGATGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCAATGTATCTTATACAATGCCATTCTAGGCCCCCTTATGCAGAGAAAAACCCGATTGCTCTGTACCCATAATATTCAGGCAATATCTTTTGCTGACAAGATTGTTGTAATGGACAAGGGACACATAAAGTGGATAGGAAATTCAGATGACTTTCCAATTAATTCATGTACACAATTCTCTCCGCTGAATGAAATTGATTCAGCTTTACAGAATCATGGACAATCTTGCAGCCCAAATCTTTATTCCAAATCCGAGGAGCAGTCTCTTCTTGGTACAAGTATTGTGCCTGCTCTGGAGGGAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAAATTGGAGTGTATAAGAATTATGCTATCTTCATTGGCTGGTTCATGACAGTCATTATATGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACAACAACAGAAAGCAGTCAGACAAGATATTCTGTGTCTTTCTATCTGGCTATACTGTGTCTCTTTTGTATTATTAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCGTTTGGGGGATTACAAGCTGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATGAATGCACCTATCCAATTCTTTGATCAGACCCCTGGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACCATTGATGATTCCCTTCCATTCATTCTGAACATTCTCCTAGCGAATTTCGTAGGCTTGTTGGGTATTACAATAATTTTGTGTTATGTACAGGTCTTCTTCTTACTCTTGCTATTACCATTTTGGTATATCTACAGCAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGACGGCTGGACAGTGTTTCCCGCTCTCCAATATACTCATCATTCACTGAAACACTTGATGGATCATCAACTATTAGAGCGTTTAAATCTGAGGACTTTTTCTTTACCAAATTCACTGAACATATAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGGTATATCTTTTGAGTCGAATATATTTATTAACATTTCAAAATGAGAAAATGCAGCAATATAAGATTTACACGTGCAACAATACAGTACATCCAAAGCTTAAATTTGAATTTGTATTAAATCTGGAGTATTGGTTGTTGCTAATAATTACTTTCTTCCAGCAATTAGGTGCATTTATCATCTCTTTCATAGCTGTGATGGCTGTTGTTGGATCTCGTGGCAGTCTGCCCATCAACTTTGGTACCCCAGGATTGGTAGGATTGGCCCTCTCATATGCCGCTCCAATTGTGTCCTTATTGGGGAGTTTTTTGTCAAGCTTCACTGAAACAGAAAAGGAAATGGTTTCAATTGAAAGAACTCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGGAGGCCTATACTTGAATCAAGATTGGCCAAATCAAGGATTTATCGAATTCCAGTGTGTTACTTTGAAATATTTACCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCTGGAGGCACACAAGTTGGAATAATTGGAAGAACAGGCGCTGGAAAGTCCAGTGTGTTAAATGCTCTTTTCCGTCTTACTCCAATATGTACAGGCTCTATCTCAATTGATGGCGTGGATATTAAAAATATTTCTGTCAGAGAACTACGTACACATTTGGCCATTGTTCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAATGAATGATGACTTAAAAATTTGGAATACATTGGAAAAGTGCCATGTGAAAGAGGAAGTAGAGGCAGCTGGAGGGTTGGACCTTCTTGTAAAGGAAGGAGGCATGTCATTTTCAGTTGGCCAGCGGCAACTTCTTTGCCTCGCCCGTGCACTTTTGAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAACTACCATATCCGGTGAATGCAAAGGAATGACAGTTCTCACAATTGCTCACCGGATTTCAACTGTTTTAAATATGGACAACATTCTGATTCTTGACCATGGGAAACTGGCTGAACAGGGTAACCCACAGGTTCTTCTGAAAGATGACACCTCGATATTTTCTAGTTTTGTTAGAGCTTCAGCAATGTAG 3903 0.3953 MTFNFITPVMNHGVVKQLDSDDLLPLPTDMSPSSCHDVILSCWQAQLSNNGSTPSLFRALCSAYGWPYLRLGLLKVINDCIGFVGPLLLNKLIQFLQQGSVNWDGYLLALSLGLTSIIKSFLDTQYSFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAQLIASATEQMMKEKDERIRKTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLACPEDKFKVGNKSSCPPSFLSEQPNSVQGLGVFIQDACCTWSSSEEQALNMVLNRVTLSVAQGSFVAVIGEVGSGKSSLLYSILGEMQLVHGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYHDSAVVMLDDVLSAVDVQVAQCILYNAILGPLMQRKTRLLCTHNIQAISFADKIVVMDKGHIKWIGNSDDFPINSCTQFSPLNEIDSALQNHGQSCSPNLYSKSEEQSLLGTSIVPALEGAEEIVEVELRKEGKVEIGVYKNYAIFIGWFMTVIICLSAILMQASRNGNDLWLSYWVDTTTESSQTRYSVSFYLAILCLFCIINSFFTLVRAFSFAFGGLQAATKVHNKLLNKLMNAPIQFFDQTPGGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYSSFTETLDGSSTIRAFKSEDFFFTKFTEHITLYQKTSYTEIVASLWLSLRLQVYLLSRIYLLTFQNEKMQQYKIYTCNNTVHPKLKFEFVLNLEYWLLLIITFFQQLGAFIISFIAVMAVVGSRGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSIERTLQYMDIPQEEQTGGLYLNQDWPNQGFIEFQCVTLKYLPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSISIDGVDIKNISVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKIWNTLEKCHVKEEVEAAGGLDLLVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQTTISGECKGMTVLTIAHRISTVLNMDNILILDHGKLAEQGNPQVLLKDDTSIFSSFVRASAM 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3478g00030 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1057 1288 IPR027417 -
Vium3478g00030 1300 CDD ABCC_MRP_domain1 394 595 - -
Vium3478g00030 1300 SUPERFAMILY ABC transporter transmembrane region 59 365 IPR036640 GO:0005524|GO:0016020
Vium3478g00030 1300 ProSitePatterns ABC transporters family signature. 1199 1213 IPR017871 GO:0005524|GO:0016887
Vium3478g00030 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 392 619 IPR003439 GO:0005524
Vium3478g00030 1300 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 688 918 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00030 1300 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 921 - -
Vium3478g00030 1300 FunFam ABC transporter C family member 2 653 930 - -
Vium3478g00030 1300 SUPERFAMILY ABC transporter transmembrane region 681 921 IPR036640 GO:0005524|GO:0016020
Vium3478g00030 1300 FunFam ATP-binding cassette (ABC) transporter, putative 1049 1297 - -
Vium3478g00030 1300 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00030 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1063 1296 IPR003439 GO:0005524
Vium3478g00030 1300 Pfam ABC transporter transmembrane region 688 918 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00030 1300 Pfam ABC transporter transmembrane region 72 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00030 1300 Pfam ABC transporter 413 545 IPR003439 GO:0005524
Vium3478g00030 1300 CDD ABC_6TM_MRP7_D2_like 687 1040 - -
Vium3478g00030 1300 FunFam ABC transporter C family member 13 376 629 - -
Vium3478g00030 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 606 IPR027417 -
Vium3478g00030 1300 CDD ABC_6TM_MRP7_D1_like 71 356 - -
Vium3478g00030 1300 SUPERFAMILY ABC transporter transmembrane region 957 1045 IPR036640 GO:0005524|GO:0016020
Vium3478g00030 1300 FunFam Multidrug resistance-associated protein ABC domain protein 47 365 - -
Vium3478g00030 1300 CDD ABCC_MRP_domain2 1061 1280 - -
Vium3478g00030 1300 Gene3D - 1050 1297 IPR027417 -
Vium3478g00030 1300 Pfam ABC transporter 1081 1227 IPR003439 GO:0005524
Vium3478g00030 1300 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524|GO:0016887
Vium3478g00030 1300 Gene3D ABC transporter type 1, transmembrane domain 657 1047 IPR036640 GO:0005524|GO:0016020
Vium3478g00030 1300 Gene3D - 386 623 IPR027417 -
Vium3478g00030 1300 Gene3D ABC transporter type 1, transmembrane domain 44 366 IPR036640 GO:0005524|GO:0016020
Vium3478g00030 1300 SMART AAA_5 1089 1267 IPR003593 GO:0016887
Vium3478g00030 1300 SMART AAA_5 422 596 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3478g00030 Vium-Chr3478 139855 153349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3478g00030 412 606 Calmodulin-binding Proteins AT2G36910 30.000 1.21e-17 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3478g00030 K05674 - gmx:100814181 2202.56