Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3478g00029 ATGAATATCTCATTTGGCATAGCCATCAATGTGATAAGGATAAAGAGACCATCTTACAAAAACAGTTTTTTGGAGGATCCACTTCTTTCGAATGGTGTGGACCTTGAGGAAGGTGGTTATCAAGACCTTGAAAATGATGGAAACTTTTGGGATTTGATGACTTTCAACTTCATAACTCCAGTAATGAATCATGGTGTGGTAAAACAATTAGACTCCGATGACCTATTGCCACTACCGACTGATATGAGTCCTTCTTCTTGTCATGATGTGATTTTGTCCTGCTGGCAAGCTCAACTGAGTAACAATGGCTCTACTCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATACCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGTGGGGCCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAACAAGGTTCAGTGAATTGGGATGGGTATTTACTTGCATTATCCTTGGGGCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATAGTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTTCGAGTGAACTTAGCAGAGCGTTCAAAATTTACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAACTTATGTAATAGTTTCCATGATATGTGGAGCCTGCCTCTACAAATTGGAGTGGCTCTCTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATAGCACAATTGATTGCAAGTGCTACTGAGCAGATGATGAAGGAGAAAGATGAAAGGATTCGTAAGACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTACGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGATACAAGATCTTTGGAAGTCAAACACTTAGCTACACGAAAGTACTTGGATGCGTGGTGTGTTTTCTTTTGGGCTACAACACCGACTCTCTTCTCTCTTTTCACTTTTGGACTCTATGCACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACGTGTCTTGCATTGTTCAACACCCTTATTTCACCACTAAATTCATTCCCTTGGGTAATAAATGGATTGATTGATGCCATCATATCTTCCAGACGGTTGAGTAGGTTTCTCGCTTGTCCTGAAGATAAATTTAAAGTGGGAAACAAAAGTTCCTGTCCACCATCATTCCTAAGTGAACAGCCTAATTCTGTACAAGGTTTGGGTGTATTTATCCAAGATGCATGTTGTACTTGGTCAAGTAGTGAGGAACAAGCATTAAATATGGTGTTGAATCGTGTGACTCTAAGTGTGGCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATCCTTGGAGAAATGCAGCTTGTTCATGGCTCTATTTATTCCAATGAATCCATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACGGTGCGCGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTATACTGATACACTGAAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGTGAGAAAGGAGTTAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCATTGTATCATGACTCAGCTGTTGTTATGCTTGATGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCAATGTATCTTATACAATGCCATTCTAGGCCCCCTTATGCAGAGAAAAACCCGATTGCTCTGTACCCATAATATTCAGGCAATATCTTTTGCTGACAAGATTGTTGTAATGGACAAGGGACACATAAAGTGGATAGGAAATTCAGATGACTTTCCAATTAATTCATGTACACAATTCTCTCCGCTGAATGAAATTGATTCAGCTTTACAGAATCATGGACAATCTTGCAGCCCAAATCTTTATTCCAAATCCGAGGAGCAGTCTCTTCTTGGTACAAGTATTGTGCCTGCTCTGGAGGGAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAAATTGGAGTGTATAAGAATTATGCTATCTTCATTGGCTGGTTCATGACAGTCATTATATGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACAACAACAGAAAGCAGTCAGACAAGATATTCTGTGTCTTTCTATCTGGCTATACTGTGTCTCTTTTGTATTATTAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCGTTTGGGGGATTACAAGCTGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATGAATGCACCTATCCAATTCTTTGATCAGACCCCTGGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACCATTGATGATTCCCTTCCATTCATTCTGAACATTCTCCTAGCGAATTTCGTAGGCTTGTTGGGTATTACAATAATTTTGTGTTATGTACAGGTCTTCTTCTTACTCTTGCTATTACCATTTTGGTATATCTACAGCAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGACGGCTGGACAGTGTTTCCCGCTCTCCAATATACTCATCATTCACTGAAACACTTGATGGATCATCAACTATTAGAGCGTTTAAATCTGAGGACTTTTTCTTTACCAAATTCACTGAACATATAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGGTATATCTTTTGAGTCGAATATATTTATTAACATTTCAAAATGAGAAAATGCAGCAATATAAGATTTACACGTGCAACAATACAGTACATCCAAAGCTTAAATTTGAATTTGTATTAAATCTGGAGTATTGGTTGTTGCTAATAATTACTTTCTTCCAGCAATTAGGTGCATTTATCATCTCTTTCATAGCTGTGATGGCTGTTGTTGGATCTCGTGGCAGTCTGCCCATCAACTTTGGTACCCCAGGATTGGTAGGATTGGCCCTCTCATATGCCGCTCCAATTGTGTCCTTATTGGGGAGTTTTTTGTCAAGCTTCACTGAAACAGAAAAGGAAATGGTTTCAATTGAAAGAACTCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGGAGGCCTATACTTGAATCAAGATTGGCCAAATCAAGGATTTATCGAATTCCAGTGTGTTACTTTGAAATATTTACCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCTGGAGGCACACAAGTTGGAATAATTGGAAGAACAGGCGCTGGAAAGTCCAGTGTGTTAAATGCTCTTTTCCGTCTTACTCCAATATGTACAGGCTCTATCTCAATTGATGGCGTGGATATTAAAAATATTTCTGTCAGAGAACTACGTACACATTTGGCCATTGTTCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAATGAATGATGACTTAAAAATTTGGAATACATTGGAAAAGTGCCATGTGAAAGAGGAAGTAGAGGCAGCTGGAGGGTTGGACCTTCTTGTAAAGGAAGGAGGCATGTCATTTTCAGTTGGCCAGCGGCAACTTCTTTGCCTCGCCCGTGCACTTTTGAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAACTACCATATCCGGTGAATGCAAAGGAATGACAGTTCTCACAATTGCTCACCGGATTTCAACTGTTTTAAATATGGACAACATTCTGATTCTTGACCATGGGAAACTGGCTGAACAGGGTAACCCACAGGTTCTTCTGAAAGATGACACCTCGATATTTTCTAGTTTTGTTAGAGCTTCAGCAATGTAG 4059 0.3947 MNISFGIAINVIRIKRPSYKNSFLEDPLLSNGVDLEEGGYQDLENDGNFWDLMTFNFITPVMNHGVVKQLDSDDLLPLPTDMSPSSCHDVILSCWQAQLSNNGSTPSLFRALCSAYGWPYLRLGLLKVINDCIGFVGPLLLNKLIQFLQQGSVNWDGYLLALSLGLTSIIKSFLDTQYSFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAQLIASATEQMMKEKDERIRKTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLACPEDKFKVGNKSSCPPSFLSEQPNSVQGLGVFIQDACCTWSSSEEQALNMVLNRVTLSVAQGSFVAVIGEVGSGKSSLLYSILGEMQLVHGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYHDSAVVMLDDVLSAVDVQVAQCILYNAILGPLMQRKTRLLCTHNIQAISFADKIVVMDKGHIKWIGNSDDFPINSCTQFSPLNEIDSALQNHGQSCSPNLYSKSEEQSLLGTSIVPALEGAEEIVEVELRKEGKVEIGVYKNYAIFIGWFMTVIICLSAILMQASRNGNDLWLSYWVDTTTESSQTRYSVSFYLAILCLFCIINSFFTLVRAFSFAFGGLQAATKVHNKLLNKLMNAPIQFFDQTPGGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYSSFTETLDGSSTIRAFKSEDFFFTKFTEHITLYQKTSYTEIVASLWLSLRLQVYLLSRIYLLTFQNEKMQQYKIYTCNNTVHPKLKFEFVLNLEYWLLLIITFFQQLGAFIISFIAVMAVVGSRGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSIERTLQYMDIPQEEQTGGLYLNQDWPNQGFIEFQCVTLKYLPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSISIDGVDIKNISVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKIWNTLEKCHVKEEVEAAGGLDLLVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQTTISGECKGMTVLTIAHRISTVLNMDNILILDHGKLAEQGNPQVLLKDDTSIFSSFVRASAM 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3478g00029 1352 Gene3D - 1102 1349 IPR027417 -
Vium3478g00029 1352 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 444 671 IPR003439 GO:0005524
Vium3478g00029 1352 SUPERFAMILY ABC transporter transmembrane region 111 417 IPR036640 GO:0005524|GO:0016020
Vium3478g00029 1352 Pfam ABC transporter transmembrane region 740 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00029 1352 Pfam ABC transporter transmembrane region 124 388 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00029 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 658 IPR027417 -
Vium3478g00029 1352 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 740 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00029 1352 CDD ABC_6TM_MRP7_D1_like 123 408 - -
Vium3478g00029 1352 Gene3D ABC transporter type 1, transmembrane domain 709 1099 IPR036640 GO:0005524|GO:0016020
Vium3478g00029 1352 CDD ABCC_MRP_domain2 1113 1332 - -
Vium3478g00029 1352 ProSitePatterns ABC transporters family signature. 572 586 IPR017871 GO:0005524|GO:0016887
Vium3478g00029 1352 Gene3D ABC transporter type 1, transmembrane domain 96 418 IPR036640 GO:0005524|GO:0016020
Vium3478g00029 1352 FunFam ABC transporter C family member 13 428 681 - -
Vium3478g00029 1352 Pfam ABC transporter 1133 1279 IPR003439 GO:0005524
Vium3478g00029 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1109 1340 IPR027417 -
Vium3478g00029 1352 SUPERFAMILY ABC transporter transmembrane region 1009 1097 IPR036640 GO:0005524|GO:0016020
Vium3478g00029 1352 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 47 973 - -
Vium3478g00029 1352 Gene3D - 438 675 IPR027417 -
Vium3478g00029 1352 FunFam ABC transporter C family member 2 705 982 - -
Vium3478g00029 1352 CDD ABCC_MRP_domain1 446 647 - -
Vium3478g00029 1352 SMART AAA_5 474 648 IPR003593 GO:0016887
Vium3478g00029 1352 SMART AAA_5 1141 1319 IPR003593 GO:0016887
Vium3478g00029 1352 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 125 400 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00029 1352 FunFam Multidrug resistance-associated protein ABC domain protein 99 417 - -
Vium3478g00029 1352 CDD ABC_6TM_MRP7_D2_like 739 1092 - -
Vium3478g00029 1352 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1115 1348 IPR003439 GO:0005524
Vium3478g00029 1352 ProSitePatterns ABC transporters family signature. 1251 1265 IPR017871 GO:0005524|GO:0016887
Vium3478g00029 1352 FunFam ATP-binding cassette (ABC) transporter, putative 1101 1349 - -
Vium3478g00029 1352 Pfam ABC transporter 465 597 IPR003439 GO:0005524
Vium3478g00029 1352 SUPERFAMILY ABC transporter transmembrane region 733 973 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3478g00029 Vium-Chr3478 139745 153350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3478g00029 464 658 Calmodulin-binding Proteins AT2G36910 30.000 1.46e-17 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3478g00029 K05674 - gmx:100814181 2289.61