Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3478g00028 ATGGAGAGAGGTTTTGGAGTTAACATAGTGACTGTTGTTATGGTCGTTGTGCTTGGATTTAGTCAGAAGATTGATCGAAGGTCAGATGGCCAGATGACCTTTCCAGAAAAAATAGTCCTGGATTTTATACCAGCTGTTGGAGCATGTCTTTCAATTGTAGACATATTTTTTCTGTGGAAGAAAGAGCATAGTAGTCACATTGTTGGATATCATAAATGGTTCTATAGCTGTTCTGAATTGATGGTTTGGATAAACATTATTTTCTTCACAAAGCGTGGCGGCAGTCACCACATTGTCTTCAATCGTGTGTTATGTTTCTGGTGGATTCCTAAAGCAATATTGGCAGTTTTGTATTTGATGACAAATATTTCATCATTTAAGGTTTCAATTTGCATCACGGAAAGCTTAGTTGTTCTCATGAATATCTCATTTGGCATAGCCATCAATGTGATAAGGATAAAGAGACCATCTTACAAAAACAGTTTTTTGGAGGATCCACTTCTTTCGAATGGTGTGGACCTTGAGGAAGGTGGTTATCAAGACCTTGAAAATGATGGAAACTTTTGGGATTTGATGACTTTCAACTTCATAACTCCAGTAATGAATCATGGTGTGGTAAAACAATTAGACTCCGATGACCTATTGCCACTACCGACTGATATGAGTCCTTCTTCTTGTCATGATGTGATTTTGTCCTGCTGGCAAGCTCAACTGAGTAACAATGGCTCTACTCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATACCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGTGGGGCCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAACAAGGTTCAGTGAATTGGGATGGGTATTTACTTGCATTATCCTTGGGGCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATAGTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTTCGAGTGAACTTAGCAGAGCGTTCAAAATTTACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAACTTATGTAATAGTTTCCATGATATGTGGAGCCTGCCTCTACAAATTGGAGTGGCTCTCTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATAGCACAATTGATTGCAAGTGCTACTGAGCAGATGATGAAGGAGAAAGATGAAAGGATTCGTAAGACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTACGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGATACAAGATCTTTGGAAGTCAAACACTTAGCTACACGAAAGTACTTGGATGCGTGGTGTGTTTTCTTTTGGGCTACAACACCGACTCTCTTCTCTCTTTTCACTTTTGGACTCTATGCACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACGTGTCTTGCATTGTTCAACACCCTTATTTCACCACTAAATTCATTCCCTTGGGTAATAAATGGATTGATTGATGCCATCATATCTTCCAGACGGTTGAGTAGGTTTCTCGCTTGTCCTGAAGATAAATTTAAAGTGGGAAACAAAAGTTCCTGTCCACCATCATTCCTAAGTGAACAGCCTAATTCTGTACAAGGTTTGGGTGTATTTATCCAAGATGCATGTTGTACTTGGTCAAGTAGTGAGGAACAAGCATTAAATATGGTGTTGAATCGTGTGACTCTAAGTGTGGCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATCCTTGGAGAAATGCAGCTTGTTCATGGCTCTATTTATTCCAATGAATCCATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACGGTGCGCGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTATACTGATACACTGAAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGTGAGAAAGGAGTTAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCATTGTATCATGACTCAGCTGTTGTTATGCTTGATGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCAATGTATCTTATACAATGCCATTCTAGGCCCCCTTATGCAGAGAAAAACCCGATTGCTCTGTACCCATAATATTCAGGCAATATCTTTTGCTGACAAGATTGTTGTAATGGACAAGGGACACATAAAGTGGATAGGAAATTCAGATGACTTTCCAATTAATTCATGTACACAATTCTCTCCGCTGAATGAAATTGATTCAGCTTTACAGAATCATGGACAATCTTGCAGCCCAAATCTTTATTCCAAATCCGAGGAGCAGTCTCTTCTTGGTACAAGTATTGTGCCTGCTCTGGAGGGAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAAATTGGAGTGTATAAGAATTATGCTATCTTCATTGGCTGGTTCATGACAGTCATTATATGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACAACAACAGAAAGCAGTCAGACAAGATATTCTGTGTCTTTCTATCTGGCTATACTGTGTCTCTTTTGTATTATTAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCGTTTGGGGGATTACAAGCTGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATGAATGCACCTATCCAATTCTTTGATCAGACCCCTGGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACCATTGATGATTCCCTTCCATTCATTCTGAACATTCTCCTAGCGAATTTCGTAGGCTTGTTGGGTATTACAATAATTTTGTGTTATGTACAGGTCTTCTTCTTACTCTTGCTATTACCATTTTGGTATATCTACAGCAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGACGGCTGGACAGTGTTTCCCGCTCTCCAATATACTCATCATTCACTGAAACACTTGATGGATCATCAACTATTAGAGCGTTTAAATCTGAGGACTTTTTCTTTACCAAATTCACTGAACATATAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGGTATATCTTTTGAGTCGAATATATTTATTAACATTTCAAAATGAGAAAATGCAGCAATATAAGATTTACACGTGCAACAATACAGTACATCCAAAGCTTAAATTTGAATTTGTATTAAATCTGGAGTATTGGTTGTTGCTAATAATTACTTTCTTCCAGCAATTAGGTGCATTTATCATCTCTTTCATAGCTGTGATGGCTGTTGTTGGATCTCGTGGCAGTCTGCCCATCAACTTTGGTACCCCAGGATTGGTAGGATTGGCCCTCTCATATGCCGCTCCAATTGTGTCCTTATTGGGGAGTTTTTTGTCAAGCTTCACTGAAACAGAAAAGGAAATGGTTTCAATTGAAAGAACTCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGGAGGCCTATACTTGAATCAAGATTGGCCAAATCAAGGATTTATCGAATTCCAGTGTGTTACTTTGAAATATTTACCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCTGGAGGCACACAAGTTGGAATAATTGGAAGAACAGGCGCTGGAAAGTCCAGTGTGTTAAATGCTCTTTTCCGTCTTACTCCAATATGTACAGGCTCTATCTCAATTGATGGCGTGGATATTAAAAATATTTCTGTCAGAGAACTACGTACACATTTGGCCATTGTTCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAATGAATGATGACTTAAAAATTTGGAATACATTGGAAAAGTGCCATGTGAAAGAGGAAGTAGAGGCAGCTGGAGGGTTGGACCTTCTTGTAAAGGAAGGAGGCATGTCATTTTCAGTTGGCCAGCGGCAACTTCTTTGCCTCGCCCGTGCACTTTTGAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAACTACCATATCCGGTGAATGCAAAGGAATGACAGTTCTCACAATTGCTCACCGGATTTCAACTGTTTTAAATATGGACAACATTCTGATTCTTGACCATGGGAAACTGGCTGAACAGGGTAACCCACAGGTTCTTCTGAAAGATGACACCTCGATATTTTCTAGTTTTGTTAGAGCTTCAGCAATGTAG 4476 0.3925 MERGFGVNIVTVVMVVVLGFSQKIDRRSDGQMTFPEKIVLDFIPAVGACLSIVDIFFLWKKEHSSHIVGYHKWFYSCSELMVWINIIFFTKRGGSHHIVFNRVLCFWWIPKAILAVLYLMTNISSFKVSICITESLVVLMNISFGIAINVIRIKRPSYKNSFLEDPLLSNGVDLEEGGYQDLENDGNFWDLMTFNFITPVMNHGVVKQLDSDDLLPLPTDMSPSSCHDVILSCWQAQLSNNGSTPSLFRALCSAYGWPYLRLGLLKVINDCIGFVGPLLLNKLIQFLQQGSVNWDGYLLALSLGLTSIIKSFLDTQYSFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAQLIASATEQMMKEKDERIRKTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLACPEDKFKVGNKSSCPPSFLSEQPNSVQGLGVFIQDACCTWSSSEEQALNMVLNRVTLSVAQGSFVAVIGEVGSGKSSLLYSILGEMQLVHGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYHDSAVVMLDDVLSAVDVQVAQCILYNAILGPLMQRKTRLLCTHNIQAISFADKIVVMDKGHIKWIGNSDDFPINSCTQFSPLNEIDSALQNHGQSCSPNLYSKSEEQSLLGTSIVPALEGAEEIVEVELRKEGKVEIGVYKNYAIFIGWFMTVIICLSAILMQASRNGNDLWLSYWVDTTTESSQTRYSVSFYLAILCLFCIINSFFTLVRAFSFAFGGLQAATKVHNKLLNKLMNAPIQFFDQTPGGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYSSFTETLDGSSTIRAFKSEDFFFTKFTEHITLYQKTSYTEIVASLWLSLRLQVYLLSRIYLLTFQNEKMQQYKIYTCNNTVHPKLKFEFVLNLEYWLLLIITFFQQLGAFIISFIAVMAVVGSRGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSIERTLQYMDIPQEEQTGGLYLNQDWPNQGFIEFQCVTLKYLPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSISIDGVDIKNISVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKIWNTLEKCHVKEEVEAAGGLDLLVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQTTISGECKGMTVLTIAHRISTVLNMDNILILDHGKLAEQGNPQVLLKDDTSIFSSFVRASAM 1491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3478g00028 1491 CDD ABCC_MRP_domain2 1252 1471 - -
Vium3478g00028 1491 ProSitePatterns ABC transporters family signature. 711 725 IPR017871 GO:0005524|GO:0016887
Vium3478g00028 1491 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 583 810 IPR003439 GO:0005524
Vium3478g00028 1491 SUPERFAMILY ABC transporter transmembrane region 250 556 IPR036640 GO:0005524|GO:0016020
Vium3478g00028 1491 FunFam Multidrug resistance-associated protein ABC domain protein 238 556 - -
Vium3478g00028 1491 CDD ABCC_MRP_domain1 585 786 - -
Vium3478g00028 1491 CDD ABC_6TM_MRP7_D1_like 262 547 - -
Vium3478g00028 1491 ProSitePatterns ABC transporters family signature. 1390 1404 IPR017871 GO:0005524|GO:0016887
Vium3478g00028 1491 Pfam ABC transporter 604 736 IPR003439 GO:0005524
Vium3478g00028 1491 FunFam ABC transporter C family member 2 844 1121 - -
Vium3478g00028 1491 Gene3D ABC transporter type 1, transmembrane domain 235 557 IPR036640 GO:0005524|GO:0016020
Vium3478g00028 1491 FunFam ABC transporter C family member 13 567 820 - -
Vium3478g00028 1491 SUPERFAMILY ABC transporter transmembrane region 1148 1236 IPR036640 GO:0005524|GO:0016020
Vium3478g00028 1491 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1254 1487 IPR003439 GO:0005524
Vium3478g00028 1491 Gene3D - 577 814 IPR027417 -
Vium3478g00028 1491 FunFam ATP-binding cassette (ABC) transporter, putative 1240 1488 - -
Vium3478g00028 1491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1248 1479 IPR027417 -
Vium3478g00028 1491 CDD ABC_6TM_MRP7_D2_like 878 1231 - -
Vium3478g00028 1491 Gene3D - 1241 1488 IPR027417 -
Vium3478g00028 1491 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 186 1112 - -
Vium3478g00028 1491 Gene3D ABC transporter type 1, transmembrane domain 848 1238 IPR036640 GO:0005524|GO:0016020
Vium3478g00028 1491 SMART AAA_5 1280 1458 IPR003593 GO:0016887
Vium3478g00028 1491 SMART AAA_5 613 787 IPR003593 GO:0016887
Vium3478g00028 1491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 797 IPR027417 -
Vium3478g00028 1491 Pfam ABC transporter transmembrane region 263 527 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00028 1491 Pfam ABC transporter transmembrane region 879 1109 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00028 1491 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 879 1109 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00028 1491 SUPERFAMILY ABC transporter transmembrane region 872 1112 IPR036640 GO:0005524|GO:0016020
Vium3478g00028 1491 Pfam ABC transporter 1272 1418 IPR003439 GO:0005524
Vium3478g00028 1491 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 264 539 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3478g00028 Vium-Chr3478 138509 153351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3478g00028 603 797 Calmodulin-binding Proteins AT2G36910 30.000 1.24e-17 87.4