Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3478g00025 ATGGACGATTTCCTGCATCTAATTTGCCCTAATTCTCCATTTATTTGGGATGGAGAGAGGTTCTCTGAATGCTTTGAAGACATTGTTTTAGGTTTTGGAGTTAACATAGTGACTGTTGTTATGGTCGTTGTGCTTGGATTTAGTCAGAAGATTGATCGAAGGTCAGATGGCCAGATGACCTTTCCAGAAAAAATAGTCCTGGATTTTATACCAGCTGTTGGAGCATGTCTTTCAATTGTAGACATATTTTTTCTGTGGAAGAAAGAGCATAGTAGTCACATTGTTGGATATCATAAATGGTTCTATAGCTGTTCTGAATTGATGGTTTGGATAAACATTATTTTCTTCACAAAGCGTGGCGGCAGTCACCACATTGTCTTCAATCGTGTGTTATGTTTCTGGTGGATTCCTAAAGCAATATTGGCAGTTTTGTATTTGATGACAAATATTTCATCATTTAAGGTTTCAATTTGCATCACGGAAAGCTTAGTTGTTCTCATGAATATCTCATTTGGCATAGCCATCAATGTGATAAGGATAAAGAGACCATCTTACAAAAACAGTTTTTTGGAGGATCCACTTCTTTCGAATGGTGTGGACCTTGAGGAAGGTGGTTATCAAGACCTTGAAAATGATGGAAACTTTTGGGATTTGATGACTTTCAACTTCATAACTCCAGTAATGAATCATGGTGTGGTAAAACAATTAGACTCCGATGACCTATTGCCACTACCGACTGATATGAGTCCTTCTTCTTGTCATGATGTGATTTTGTCCTGCTGGCAAGCTCAACTGAGTAACAATGGCTCTACTCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATACCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGTGGGGCCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAACAAGGTTCAGTGAATTGGGATGGGTATTTACTTGCATTATCCTTGGGGCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATAGTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTTCGAGTGAACTTAGCAGAGCGTTCAAAATTTACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAACTTATGTAATAGTTTCCATGATATGTGGAGCCTGCCTCTACAAATTGGAGTGGCTCTCTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATAGCACAATTGATTGCAAGTGCTACTGAGCAGATGATGAAGGAGAAAGATGAAAGGATTCGTAAGACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTACGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGATACAAGATCTTTGGAAGTCAAACACTTAGCTACACGAAAGTACTTGGATGCGTGGTGTGTTTTCTTTTGGGCTACAACACCGACTCTCTTCTCTCTTTTCACTTTTGGACTCTATGCACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACGTGTCTTGCATTGTTCAACACCCTTATTTCACCACTAAATTCATTCCCTTGGGTAATAAATGGATTGATTGATGCCATCATATCTTCCAGACGGTTGAGTAGGTTTCTCGCTTGTCCTGAAGATAAATTTAAAGTGGGAAACAAAAGTTCCTGTCCACCATCATTCCTAAGTGAACAGCCTAATTCTGTACAAGGTTTGGGTGTATTTATCCAAGATGCATGTTGTACTTGGTCAAGTAGTGAGGAACAAGCATTAAATATGGTGTTGAATCGTGTGACTCTAAGTGTGGCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATCCTTGGAGAAATGCAGCTTGTTCATGGCTCTATTTATTCCAATGAATCCATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACGGTGCGCGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTATACTGATACACTGAAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGTGAGAAAGGAGTTAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCATTGTATCATGACTCAGCTGTTGTTATGCTTGATGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCAATGTATCTTATACAATGCCATTCTAGGCCCCCTTATGCAGAGAAAAACCCGATTGCTCTGTACCCATAATATTCAGGCAATATCTTTTGCTGACAAGATTGTTGTAATGGACAAGGGACACATAAAGTGGATAGGAAATTCAGATGACTTTCCAATTAATTCATGTACACAATTCTCTCCGCTGAATGAAATTGATTCAGCTTTACAGAATCATGGACAATCTTGCAGCCCAAATCTTTATTCCAAATCCGAGGAGCAGTCTCTTCTTGGTACAAGTATTGTGCCTGCTCTGGAGGGAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAAATTGGAGTGTATAAGAATTATGCTATCTTCATTGGCTGGTTCATGACAGTCATTATATGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACAACAACAGAAAGCAGTCAGACAAGATATTCTGTGTCTTTCTATCTGGCTATACTGTGTCTCTTTTGTATTATTAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCGTTTGGGGGATTACAAGCTGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATGAATGCACCTATCCAATTCTTTGATCAGACCCCTGGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACCATTGATGATTCCCTTCCATTCATTCTGAACATTCTCCTAGCGAATTTCGTAGGCTTGTTGGGTATTACAATAATTTTGTGTTATGTACAGGTCTTCTTCTTACTCTTGCTATTACCATTTTGGTATATCTACAGCAGACTTCAGTGGCTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGACGGCTGGACAGTGTTTCCCGCTCTCCAATATACTCATCATTCACTGAAACACTTGATGGATCATCAACTATTAGAGCGTTTAAATCTGAGGACTTTTTCTTTACCAAATTCACTGAACATATAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGCAATTAGGTGCATTTATCATCTCTTTCATAGCTGTGATGGCTGTTGTTGGATCTCGTGGCAGTCTGCCCATCAACTTTGGTACCCCAGGATTGGTAGGATTGGCCCTCTCATATGCCGCTCCAATTGTGTCCTTATTGGGGAGTTTTTTGTCAAGCTTCACTGAAACAGAAAAGGAAATGGTTTCAATTGAAAGAACTCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGGAGGCCTATACTTGAATCAAGATTGGCCAAATCAAGGATTTATCGAATTCCAGTGTGTTACTTTGAAATATTTACCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCTGGAGGCACACAAGTTGGAATAATTGGAAGAACAGGCGCTGGAAAGTCCAGTGTGTTAAATGCTCTTTTCCGTCTTACTCCAATATGTACAGGCTCTATCTCAATTGATGGCGTGGATATTAAAAATATTTCTGTCAGAGAACTACGTACACATTTGGCCATTGTTCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAATGAATGATGACTTAAAAATTTGGAATACATTGGAAAAGTGCCATGTGAAAGAGGAAGTAGAGGCAGCTGGAGGGTTGGACCTTCTTGTAAAGGAAGGAGGCATGTCATTTTCAGTTGGCCAGCGGCAACTTCTTTGCCTCGCCCGTGCACTTTTGAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAACTACCATATCCGGTGAATGCAAAGGAATGACAGTTCTCACAATTGCTCACCGGATTTCAACTGTTTTAAATATGGACAACATTCTGATTCTTGACCATGGGAAACTGGCTGAACAGGGTAACCCACAGGTTCTTCTGAAAGATGACACCTCGATATTTTCTAGTTTTGTTAGAGCTTCAGCAATGTAG 4407 0.3966 MDDFLHLICPNSPFIWDGERFSECFEDIVLGFGVNIVTVVMVVVLGFSQKIDRRSDGQMTFPEKIVLDFIPAVGACLSIVDIFFLWKKEHSSHIVGYHKWFYSCSELMVWINIIFFTKRGGSHHIVFNRVLCFWWIPKAILAVLYLMTNISSFKVSICITESLVVLMNISFGIAINVIRIKRPSYKNSFLEDPLLSNGVDLEEGGYQDLENDGNFWDLMTFNFITPVMNHGVVKQLDSDDLLPLPTDMSPSSCHDVILSCWQAQLSNNGSTPSLFRALCSAYGWPYLRLGLLKVINDCIGFVGPLLLNKLIQFLQQGSVNWDGYLLALSLGLTSIIKSFLDTQYSFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAQLIASATEQMMKEKDERIRKTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLACPEDKFKVGNKSSCPPSFLSEQPNSVQGLGVFIQDACCTWSSSEEQALNMVLNRVTLSVAQGSFVAVIGEVGSGKSSLLYSILGEMQLVHGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYHDSAVVMLDDVLSAVDVQVAQCILYNAILGPLMQRKTRLLCTHNIQAISFADKIVVMDKGHIKWIGNSDDFPINSCTQFSPLNEIDSALQNHGQSCSPNLYSKSEEQSLLGTSIVPALEGAEEIVEVELRKEGKVEIGVYKNYAIFIGWFMTVIICLSAILMQASRNGNDLWLSYWVDTTTESSQTRYSVSFYLAILCLFCIINSFFTLVRAFSFAFGGLQAATKVHNKLLNKLMNAPIQFFDQTPGGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQWLQFFYRSTSRELRRLDSVSRSPIYSSFTETLDGSSTIRAFKSEDFFFTKFTEHITLYQKTSYTEIVASLWLSLRLQQLGAFIISFIAVMAVVGSRGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSIERTLQYMDIPQEEQTGGLYLNQDWPNQGFIEFQCVTLKYLPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSISIDGVDIKNISVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKIWNTLEKCHVKEEVEAAGGLDLLVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQTTISGECKGMTVLTIAHRISTVLNMDNILILDHGKLAEQGNPQVLLKDDTSIFSSFVRASAM 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3478g00025 1468 CDD ABCC_MRP_domain1 612 813 - -
Vium3478g00025 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1456 IPR027417 -
Vium3478g00025 1468 ProSitePatterns ABC transporters family signature. 738 752 IPR017871 GO:0005524|GO:0016887
Vium3478g00025 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1464 IPR003439 GO:0005524
Vium3478g00025 1468 FunFam ABC transporter C family member 13 594 847 - -
Vium3478g00025 1468 Gene3D - 604 841 IPR027417 -
Vium3478g00025 1468 SUPERFAMILY ABC transporter transmembrane region 902 1213 IPR036640 GO:0005524|GO:0016020
Vium3478g00025 1468 SMART AAA_5 640 814 IPR003593 GO:0016887
Vium3478g00025 1468 SMART AAA_5 1257 1435 IPR003593 GO:0016887
Vium3478g00025 1468 SUPERFAMILY ABC transporter transmembrane region 277 583 IPR036640 GO:0005524|GO:0016020
Vium3478g00025 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 610 837 IPR003439 GO:0005524
Vium3478g00025 1468 CDD ABC_6TM_MRP7_D1_like 289 574 - -
Vium3478g00025 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 566 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00025 1468 Pfam ABC transporter 631 763 IPR003439 GO:0005524
Vium3478g00025 1468 Gene3D ABC transporter type 1, transmembrane domain 875 1215 IPR036640 GO:0005524|GO:0016020
Vium3478g00025 1468 Gene3D ABC transporter type 1, transmembrane domain 262 584 IPR036640 GO:0005524|GO:0016020
Vium3478g00025 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00025 1468 FunFam ABC transporter C family member 5 871 1214 - -
Vium3478g00025 1468 CDD ABCC_MRP_domain2 1229 1448 - -
Vium3478g00025 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 824 IPR027417 -
Vium3478g00025 1468 FunFam Multidrug resistance-associated protein ABC domain protein 265 583 - -
Vium3478g00025 1468 ProSitePatterns ABC transporters family signature. 1367 1381 IPR017871 GO:0005524|GO:0016887
Vium3478g00025 1468 FunFam ATP-binding cassette (ABC) transporter, putative 1217 1465 - -
Vium3478g00025 1468 Pfam ABC transporter transmembrane region 906 1156 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00025 1468 Pfam ABC transporter transmembrane region 290 554 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00025 1468 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 212 1464 - -
Vium3478g00025 1468 CDD ABC_6TM_MRP7_D2_like 905 1208 - -
Vium3478g00025 1468 Gene3D - 1218 1465 IPR027417 -
Vium3478g00025 1468 Pfam ABC transporter 1249 1395 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3478g00025 Vium-Chr3478 137793 153350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3478g00025 630 824 Calmodulin-binding Proteins AT2G36910 30.000 1.27e-17 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3478g00025 K05674 - gmx:100814181 2563.1