Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3478g00023 ATGGACGATTTCCTGCATCTAATTTGCCCTAATTCTCCATTTATTTGGGATGGAGAGAGGTTCTCTGAATGCTTTGAAGACATTGTTTTAGGTTTTGGAGTTAACATAGTGACTGTTGTTATGGTCGTTGTGCTTGGATTTAGTCAGAAGATTGATCGAAGGTCAGATGGCCAGATGACCTTTCCAGAAAAAATAGTCCTGGATTTTATACCAGCTGTTGGAGCATGTCTTTCAATTGTAGACATATTTTTTCTGTGGAAGAAAGAGCATAGTAGTCACATTGTTGGATATCATAAATGGTTCTATAGCTGTTCTGAATTGATGGTTTGGATAAACATTATTTTCTTCACAAAGCGTGGCGGCAGTCACCACATTGTCTTCAATCGTGTGTTATGTTTCTGGTGGATTCCTAAAGCAATATTGGCAGTTTTGTATTTGATGACAAATATTTCATCATTTAAGGTTTCAATTTGCATCACGGAAAGCTTAGTTGTTCTCATGAATATCTCATTTGGCATAGCCATCAATGTGATAAGGATAAAGAGACCATCTTACAAAAACAGTTTTTTGGAGGATCCACTTCTTTCGAATGGTGTGGACCTTGAGGAAGGTGGTTATCAAGACCTTGAAAATGATGGAAACTTTTGGGATTTGATGACTTTCAACTTCATAACTCCAGTAATGAATCATGGTGTGGTAAAACAATTAGACTCCGATGACCTATTGCCACTACCGACTGATATGAGTCCTTCTTCTTGTCATGATGTGATTTTGTCCTGCTGGCAAGCTCAACTGAGTAACAATGGCTCTACTCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATACCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGTGGGGCCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAACAAGGTTCAGTGAATTGGGATGGGTATTTACTTGCATTATCCTTGGGGCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATAGTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTTCGAGTGAACTTAGCAGAGCGTTCAAAATTTACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAACTTATGTAATAGTTTCCATGATATGTGGAGCCTGCCTCTACAAATTGGAGTGGCTCTCTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATAGCACAATTGATTGCAAGTGCTACTGAGCAGATGATGAAGGAGAAAGATGAAAGGATTCGTAAGACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTACGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGATACAAGATCTTTGGAAGTCAAACACTTAGCTACACGAAAGTACTTGGATGCGTGGTGTGTTTTCTTTTGGGCTACAACACCGACTCTCTTCTCTCTTTTCACTTTTGGACTCTATGCACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACGTGTCTTGCATTGTTCAACACCCTTATTTCACCACTAAATTCATTCCCTTGGGTAATAAATGGATTGATTGATGCCATCATATCTTCCAGACGGTTGAGTAGGTTTCTCGCTTGTCCTGAAGATAAATTTAAAGTGGGAAACAAAAGTTCCTGTCCACCATCATTCCTAAGTGAACAGCCTAATTCTGTACAAGGTTTGGGTGTATTTATCCAAGATGCATGTTGTACTTGGTCAAGTAGTGAGGAACAAGCATTAAATATGGTGTTGAATCGTGTGACTCTAAGTGTGGCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATCCTTGGAGAAATGCAGCTTGTTCATGGCTCTATTTATTCCAATGAATCCATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACGGTGCGCGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTATACTGATACACTGAAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGTGAGAAAGGAGTTAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCATTGTATCATGACTCAGCTGTTGTTATGCTTGATGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCAATGTATCTTATACAATGCCATTCTAGGCCCCCTTATGCAGAGAAAAACCCGATTGCTCTGTACCCATAATATTCAGGCAATATCTTTTGCTGACAAGATTGTTGTAATGGACAAGGGACACATAAAGTGGATAGGAAATTCAGATGACTTTCCAATTAATTCATGTACACAATTCTCTCCGCTGAATGAAATTGATTCAGCTTTACAGAATCATGGACAATCTTGCAGCCCAAATCTTTATTCCAAATCCGAGGAGCAGTCTCTTCTTGGTACAAGTATTGTGCCTGCTCTGGAGGGAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAAATTGGAGTGTATAAGAATTATGCTATCTTCATTGGCTGGTTCATGACAGTCATTATATGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACAACAACAGAAAGCAGTCAGACAAGATATTCTGTGTCTTTCTATCTGGCTATACTGTGTCTCTTTTGTATTATTAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCGTTTGGGGGATTACAAGCTGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATGAATGCACCTATCCAATTCTTTGATCAGACCCCTGGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACCATTGATGATTCCCTTCCATTCATTCTGAACATTCTCCTAGCGAATTTCGTAGGCTTGTTGGGTATTACAATAATTTTGTGTTATGTACAGGTCTTCTTCTTACTCTTGCTATTACCATTTTGGTATATCTACAGCAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGACGGCTGGACAGTGTTTCCCGCTCTCCAATATACTCATCATTCACTGAAACACTTGATGGATCATCAACTATTAGAGCGTTTAAATCTGAGGACTTTTTCTTTACCAAATTCACTGAACATATAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGGTATATCTTTTGAGTCGAATATATTTATTAACATTTCAAAATGAGAAAATGCAGCAATATAAGATTTACACGTGCAACAATACAGTACATCCAAAGCTTAAATTTGAATTTGTATTAAATCTGGAGTATTGGTTGTTGCTAATAATTACTTTCTTCCAGCAATTAGGTGCATTTATCATCTCTTTCATAGCTGTGATGGCTGTTGTTGGATCTCGTGGCAGTCTGCCCATCAACTTTGGTACCCCAGGATTGGTAGGATTGGCCCTCTCATATGCCGCTCCAATTGTGTCCTTATTGGGGAGTTTTTTGTCAAGCTTCACTGAAACAGAAAAGGAAATGGTTTCAATTGAAAGAACTCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGGAGGCCTATACTTGAATCAAGATTGGCCAAATCAAGGATTTATCGAATTCCAGTGTGTTACTTTGAAATATTTACCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCTGGAGGCACACAAGTTGGAATAATTGGAAGAACAGGCGCTGGAAAGTCCAGTGTGTTAAATGCTCTTTTCCGTCTTACTCCAATATGTACAGGCTCTATCTCAATTGATGGCGTGGATATTAAAAATATTTCTGTCAGAGAACTACGTACACATTTGGCCATTGTTCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAATGAATGATGACTTAAAAATTTGGAATACATTGGAAAAGTGCCATGTGAAAGAGGAAGTAGAGGCAGCTGGAGGGTTGGACCTTCTTGTAAAGGAAGGAGGCATGTCATTTTCAGTTGGCCAGCGGCAACTTCTTTGCCTCGCCCGTGCACTTTTGAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAACTACCATATCCGGTGAATGCAAAGGAATGACAGTTCTCACAATTGCTCACCGGATTTCAACTGTTTTAAATATGGACAACATTCTGATTCTTGACCATGGGAAACTGGCTGAACAGGGTAACCCACAGGTTCTTCTGAAAGATGACACCTCGATATTTTCTAGTTTTGTTAGAGCTTCAGCAATGTAG 4557 0.3921 MDDFLHLICPNSPFIWDGERFSECFEDIVLGFGVNIVTVVMVVVLGFSQKIDRRSDGQMTFPEKIVLDFIPAVGACLSIVDIFFLWKKEHSSHIVGYHKWFYSCSELMVWINIIFFTKRGGSHHIVFNRVLCFWWIPKAILAVLYLMTNISSFKVSICITESLVVLMNISFGIAINVIRIKRPSYKNSFLEDPLLSNGVDLEEGGYQDLENDGNFWDLMTFNFITPVMNHGVVKQLDSDDLLPLPTDMSPSSCHDVILSCWQAQLSNNGSTPSLFRALCSAYGWPYLRLGLLKVINDCIGFVGPLLLNKLIQFLQQGSVNWDGYLLALSLGLTSIIKSFLDTQYSFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAQLIASATEQMMKEKDERIRKTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLACPEDKFKVGNKSSCPPSFLSEQPNSVQGLGVFIQDACCTWSSSEEQALNMVLNRVTLSVAQGSFVAVIGEVGSGKSSLLYSILGEMQLVHGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYHDSAVVMLDDVLSAVDVQVAQCILYNAILGPLMQRKTRLLCTHNIQAISFADKIVVMDKGHIKWIGNSDDFPINSCTQFSPLNEIDSALQNHGQSCSPNLYSKSEEQSLLGTSIVPALEGAEEIVEVELRKEGKVEIGVYKNYAIFIGWFMTVIICLSAILMQASRNGNDLWLSYWVDTTTESSQTRYSVSFYLAILCLFCIINSFFTLVRAFSFAFGGLQAATKVHNKLLNKLMNAPIQFFDQTPGGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYSSFTETLDGSSTIRAFKSEDFFFTKFTEHITLYQKTSYTEIVASLWLSLRLQVYLLSRIYLLTFQNEKMQQYKIYTCNNTVHPKLKFEFVLNLEYWLLLIITFFQQLGAFIISFIAVMAVVGSRGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSIERTLQYMDIPQEEQTGGLYLNQDWPNQGFIEFQCVTLKYLPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSISIDGVDIKNISVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKIWNTLEKCHVKEEVEAAGGLDLLVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQTTISGECKGMTVLTIAHRISTVLNMDNILILDHGKLAEQGNPQVLLKDDTSIFSSFVRASAM 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3478g00023 1518 CDD ABCC_MRP_domain1 612 813 - -
Vium3478g00023 1518 SMART AAA_5 1307 1485 IPR003593 GO:0016887
Vium3478g00023 1518 SMART AAA_5 640 814 IPR003593 GO:0016887
Vium3478g00023 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1275 1506 IPR027417 -
Vium3478g00023 1518 ProSitePatterns ABC transporters family signature. 738 752 IPR017871 GO:0005524|GO:0016887
Vium3478g00023 1518 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1136 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00023 1518 FunFam Multidrug resistance-associated protein ABC domain protein 265 583 - -
Vium3478g00023 1518 SUPERFAMILY ABC transporter transmembrane region 1175 1263 IPR036640 GO:0005524|GO:0016020
Vium3478g00023 1518 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1281 1514 IPR003439 GO:0005524
Vium3478g00023 1518 Pfam ABC transporter 1299 1445 IPR003439 GO:0005524
Vium3478g00023 1518 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 610 837 IPR003439 GO:0005524
Vium3478g00023 1518 CDD ABCC_MRP_domain2 1279 1498 - -
Vium3478g00023 1518 CDD ABC_6TM_MRP7_D1_like 289 574 - -
Vium3478g00023 1518 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 566 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00023 1518 FunFam ABC transporter C family member 13 594 847 - -
Vium3478g00023 1518 ProSitePatterns ABC transporters family signature. 1417 1431 IPR017871 GO:0005524|GO:0016887
Vium3478g00023 1518 Gene3D ABC transporter type 1, transmembrane domain 262 584 IPR036640 GO:0005524|GO:0016020
Vium3478g00023 1518 SUPERFAMILY ABC transporter transmembrane region 899 1139 IPR036640 GO:0005524|GO:0016020
Vium3478g00023 1518 FunFam ATP-binding cassette (ABC) transporter, putative 1267 1515 - -
Vium3478g00023 1518 SUPERFAMILY ABC transporter transmembrane region 277 583 IPR036640 GO:0005524|GO:0016020
Vium3478g00023 1518 Gene3D ABC transporter type 1, transmembrane domain 875 1265 IPR036640 GO:0005524|GO:0016020
Vium3478g00023 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 824 IPR027417 -
Vium3478g00023 1518 Gene3D - 604 841 IPR027417 -
Vium3478g00023 1518 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 213 1139 - -
Vium3478g00023 1518 Gene3D - 1268 1515 IPR027417 -
Vium3478g00023 1518 CDD ABC_6TM_MRP7_D2_like 905 1258 - -
Vium3478g00023 1518 Pfam ABC transporter 631 763 IPR003439 GO:0005524
Vium3478g00023 1518 FunFam ABC transporter C family member 2 871 1148 - -
Vium3478g00023 1518 Pfam ABC transporter transmembrane region 290 554 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3478g00023 1518 Pfam ABC transporter transmembrane region 906 1136 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3478g00023 Vium-Chr3478 137793 153351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3478g00023 630 824 Calmodulin-binding Proteins AT2G36910 30.000 1.29e-17 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3478g00023 K05674 - gmx:100814181 2545