Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3478g00018 ATGGAGACACAACGAGCACAGACACAGCTCAGAAACTCAACAGAATCAGAAAACAATTACAGTAATAATAATCATCACAACAATGTTAACCATAATCGTAACTTGATGGTGAAGACTGAGTTGTGTAGGAGATTCAGGAGAGGCGTCTGCGTTCATGGAACCAAATGCGATTACGCGCACAGCGTTGCAGAGCTCCGACGCCAACCCAAACTATGCAGATTGTTCCTTCAAAACAAACACTGCCCCTACGGACGCACTTGTCGCTACCTGCATTCAGCCACACCAACGCCGCCACCGCCACCACCACAACCATCAACTTTTCAAATTCCAAATCTATCATCTCAACCAGAAATAGGGCAACTTGATCGCTCCTCTTCTGCGGAATACAAGAGAATGAGAACTTGTGCAGAAAGTTGGACAATGCAAACTGATACTGCTGCTGCTACTGCAAATGCCTCAACTAGCACTCTGGCAGCAGGTAGCCCTTCCCCTAAGAATGAACCATATGCTGTGAAGTTCGTATTCAAGAAAAACGAACTAAAAAAGATCGATCGCATTTATGCTGATTGGATTTCAGATTTACCTCGCTGA 591 0.4501 METQRAQTQLRNSTESENNYSNNNHHNNVNHNRNLMVKTELCRRFRRGVCVHGTKCDYAHSVAELRRQPKLCRLFLQNKHCPYGRTCRYLHSATPTPPPPPPQPSTFQIPNLSSQPEIGQLDRSSSAEYKRMRTCAESWTMQTDTAAATANASTSTLAAGSPSPKNEPYAVKFVFKKNELKKIDRIYADWISDLPR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3478g00018 196 SUPERFAMILY CCCH zinc finger 68 94 IPR036855 GO:0046872
Vium3478g00018 196 ProSiteProfiles Zinc finger C3H1-type profile. 66 94 IPR000571 GO:0046872
Vium3478g00018 196 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 38 61 IPR000571 GO:0046872
Vium3478g00018 196 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 70 92 IPR000571 GO:0046872
Vium3478g00018 196 SMART c3hfinal6 36 62 IPR000571 GO:0046872
Vium3478g00018 196 SMART c3hfinal6 66 93 IPR000571 GO:0046872
Vium3478g00018 196 ProSiteProfiles Zinc finger C3H1-type profile. 36 63 IPR000571 GO:0046872
Vium3478g00018 196 MobiDBLite consensus disorder prediction 1 30 - -
Vium3478g00018 196 SUPERFAMILY CCCH zinc finger 35 67 IPR036855 GO:0046872
Vium3478g00018 196 Gene3D - 30 68 - -
Vium3478g00018 196 Gene3D - 69 94 - -
Vium3478g00018 196 PANTHER CCCH ZINC FINGER/TIS11-RELATED 32 126 IPR045877 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3478g00018 36 94 C3H Transcription Factor Family AT1G68200 40.299 2.64e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium3478g00018 zf-CCCH 8.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3478g00018 - - vun:114185879 264.233