Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3478g00011 ATGGAAAGCTTAAAAACACCTTTTAAGGGTGTTATAAAGGATCTTCAAGGAAGAGCTTTGTTTTATAAAGATGATTGGACAACTGGTCTCTACTCAGGAACTAGAATATTGGCCCCAACTACCTATATTTTCTTTGCTTCTGCTCTTCCGGTTATTGCTTTTGGGGAGCAGCTAAGTAGAGATACAGATGGAAGCTTGAGCACTGTAGAAACGCTGGCTTCTACAGCTATTTGTGGAATCATACACTCAATTTTGGGTGGCCAACCTCTCTTAATTGTAGGAGTTGCTGAGCCCACTATCATTATGTACACCTATTTGTACAACTTCGCCAAAGATAAGGATTCCTTGGGACGAGAACTCTTTTTAGCTTGGGCAGGATGGGTTTGTATATGGACTGCTCTCTTGTTGTTTCTTCTAGCAATATTCAATGCTGGAAATATCATCAAAAGATTTACAAGGATCGCGGGTGAGCTTTTTGGCATGTTGATCACAGTCTTGTTCATTCAAGAGGCTATAAAGGGAATTGTAAGTGAGTTTAATGTTCCTAAAGAGGGAGACCCAACATCGAAAAAGTACCATTTTGATTGGCTGTATGCAAATGGGTTGATGGGAATTATATTCTCCTTTGGCCTTCTCTATACGTCTTTAAAGAGTAGAAGAGCAAGGTCATGGTTATATGGCACAGGGTGGTTTAGAAGTTTTGTTGCAGACTATGGAGTACCTTTCATGGTGGTGGTGTGGACAGCACTATCATTCATAGTACCAAGTAAAGTGCCTTCTGGAGTTCCCAGAAGGCTCACCTCTCCTCTTGTTTGGGAGTCTACATCTTTACATCATTGGACAGTAATCAAAGATATGGGGAAGGTTTCTCCGTCATATATTTTTGCTGCTTTTATTCCCGCTATAATGATAGCAGGGCTTTACTTCTTTGACCATAGTGTTGCTTCCCAAATGGCACAACAGAAGGAATTCAATCTCAAGAAACCTTCTGCATACCACTATGACATATTGTTGCTAGGACTAACGACTTTGCTTTGTGGATTAATTGGCTTACCTCCTTCAAATGGAGTTCTTCCTCAATCTCCAATGCACACCAAGAGCCTGGCTGTTCTCAAGAAACAGATGATACGAAGAAAGATGGTTAAAAGTGCCAAGGAAAGCATAAATCTTAAAGCTAGCAATTCTGAAATTTATGGAAAGATGCAAGCAGTGTTTATAGAAATGGATAACTGTCCAGATAATCATTTAGTGGTCAAAGAATTAGAGGATTTGAAAGAGGTTGTCTTAAACGGTGAAGACAAAGGACATGACAACAAGAGTAACTTTGATCCTGAAAAACACATTGATAAATATTTGCCTGTCAGAGTAAAGGAGCAGAGAGTGAGCAATCTCTTACAATCAATCTTTGTTGGAGCATCAGTCTTTGGCATGCCTGTCATAAAAAAGATACCAACTTCAGTTCTGTGGGGATATTTTGCGTACATGGCCATTGATAGTCTTCCAGGAAATCAATTTTGGGAAAGGATCTTACTCCTTTTTGTAACACCTAGTAGGTGGCACAAGTTGTTGAAGGGGGATCATGCTTCCTATGTCGAGACAGTACCTTACAGATACATAGTATTGTTCACACTCTTCCAATGTGTGTATTTCTTGGTTTGTTTTGGAGTGACATGGATTCCCATAGCTGGAATACTGTTCCCTTTGCCTTTCTTTTTACTGATCACATTGAGGCAGCATATACTCCCCAAGCTGTTCAAGCCTCACCATCTTAGGGAACTGGATGCAGCTGAATACGAAGAAATAGTTGCTGCTCCAGGACTAACTTTCAATAGGTCTTCCAGGGAGGTAGAATCACCCAGAGTTGGATCAGTGGAAATAGTTAATGCTGAAATATTAGATGAGTTAACTACAAATAGAGGGGAGTTGAAGGTTAGAAATGTCAGCTTTAGTGAGGAAAGAAATCGCCAGGTGCACCCTGATGAAACAGGATCTCCAGACCCAACTTGTTAG 2010 0.404 MESLKTPFKGVIKDLQGRALFYKDDWTTGLYSGTRILAPTTYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYLYNFAKDKDSLGRELFLAWAGWVCIWTALLLFLLAIFNAGNIIKRFTRIAGELFGMLITVLFIQEAIKGIVSEFNVPKEGDPTSKKYHFDWLYANGLMGIIFSFGLLYTSLKSRRARSWLYGTGWFRSFVADYGVPFMVVVWTALSFIVPSKVPSGVPRRLTSPLVWESTSLHHWTVIKDMGKVSPSYIFAAFIPAIMIAGLYFFDHSVASQMAQQKEFNLKKPSAYHYDILLLGLTTLLCGLIGLPPSNGVLPQSPMHTKSLAVLKKQMIRRKMVKSAKESINLKASNSEIYGKMQAVFIEMDNCPDNHLVVKELEDLKEVVLNGEDKGHDNKSNFDPEKHIDKYLPVRVKEQRVSNLLQSIFVGASVFGMPVIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTPSRWHKLLKGDHASYVETVPYRYIVLFTLFQCVYFLVCFGVTWIPIAGILFPLPFFLLITLRQHILPKLFKPHHLRELDAAEYEEIVAAPGLTFNRSSREVESPRVGSVEIVNAEILDELTTNRGELKVRNVSFSEERNRQVHPDETGSPDPTC 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3478g00011 669 Gene3D Helical hairpin bin 18 60 - -
Vium3478g00011 669 Pfam HCO3- transporter family 454 544 IPR011531 GO:0006820|GO:0016020
Vium3478g00011 669 Pfam HCO3- transporter family 7 180 IPR011531 GO:0006820|GO:0016020
Vium3478g00011 669 Pfam HCO3- transporter family 200 375 IPR011531 GO:0006820|GO:0016020
Vium3478g00011 669 PANTHER ANION EXCHANGE PROTEIN 5 602 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vium3478g00011 669 MobiDBLite consensus disorder prediction 650 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3478g00011 Vium-Chr3478 72725 77247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3478g00011 1 661 Antiporters AT1G74810 68.468 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3478g00011 K24194 - gmx:100811184 1187.17