Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3474g00003 ATGCCTCCCAAGAAGAAGAAACTCAATACCGAGCAACCTTCCAAGTTCGGCATCCAGCACTTCTTCGATCTCGCCTCTCAGAAATACCACCACCTTCAACCCCACACCACCACCACCGCCGCCACCGCCACCTCCACCAGAACTGCCGCCACCGCCACCTCTACCAGCACTGCCGCCACCGCCACATCTATCAGCACTGCCGCCGCCACCACCTCCACCAGCACTGCTGTCGCCACCTCCACCAGCACCGCTGTCGCCACCTCCACCACCACCTCCACCATCAATTCGCCACAGCAACCCGACGAAGTGTCTTCGCAGACGCGTTTCAACTTCTCCCCTGGAATGTTAGTGAAGCAGAGCCAGGACGACGCCGTCAACGAGGTCACCTGGAAAATATCTCCCGTGAATGAGAGGCTTCTGGCTGTTTCCAAACACACGCCTGAAGTGATCAAAGCGTTGGCTGCCTCTTCCAAACTAAACTTGTCGGCAATTCGCAATGACAGTGGCAAGGAGACTTGTCTGGATAAGGTTGCTTCGCCAACTCCCAAGGTGCCGTTGAGCTTCAAAAGGATAAACTTGGCCCTTGATGTGATCGGACAGAGTCCCTTCAGAACTCCACCGTCTCTGTCTTATCGGCCTGACAAGGTGCAGCGGAGCAAGGATATTGAACACAAGAGACCGTGCGACCGGCCTTTGCTAAGACAGAACAAAAAGGCATTGCTTGAACTCCTAGATCAAGTTGAAGATGCCATTGCTATTGATGATGCTCCAGTTTGCAATAGCAACACTTATTCCTTTAAAGTACCTCAAAGTCAAGCTTACGAGCTCCCTGTCAAAGTCAGACCTGCAGTAGAAATGACCAAATCACATTTACCTAAAGAGGGTGTTGATGTCTTCTCCAATTCTAATTATTTGGTTTTAGAGGTATCTGAACTTAGGTCTGCTGATTCATCTGCTGCTCAATGCTCATCATACAAGGTGCTACGTTTGCTAAATGAACAAACTGGGGAAGAGCGGGCTGTAAACCTATGGAATGAGTGGTCTTGTTGTGTAATTTCACCTGGAGATACTGTGCATGTAATCGGACAATTTGATGAAGGGGGGAATTGTGATATTGATCGTGATAAAAACTTTTTGATTGTACACCCAGATATTCTAATGTCTGGAACGCGGGTTGCTTCCAGTTTTAGCTGCCCAAGGAGAACTGTCTTAGACGAGAGGCTGAAAAACAATGATTACTCAACTGCAGCATTAGCTGGAACAATGCTGCACCAAATTTTCCAGGCTGGGCTAACAAATGACCATCCTACAGTAAATTTCATGGAAGATTATGCAGAAGTGGTATTACAGAAAAACATTGAAAGTTTGTATGCATGTGGAGTAAATGAGAATGACATTCGCAAAACTATGAGAGATGCTATTCCTAGATTACTAAGTTGGATCATACGGTTTAAAAATATGGAGGAAAGAAAAGACCCGAATGTCAAATTTGGATTTGATAATGGACCAAAGAATGTTGGCATATCTGAGGTAATTGATATTGAAGAGATGGTGTGGGCTCCAAAATATGGATTAAAAGGGATGATTGATGCTTCAGTCAGAGTGAAAATTCAATCACAAAGGGATGAACAAGAGGAAAAGATCATGCCAGTAGAGTTCAAGACTGGAAAAACACCAAATAGCCAGTCATCAGTTGAGCACAGTGCCCAAGTAATTTTGTACACTCTCTTGATGTCTGAAAGGTATCAGACAACTGTTGATTCTGGTCTTCTATATTATCTCCAATCTGATCAAACACAGGGCATCGTGGTTCAAAGATCTGACTTAACTGGGCTAATAATGCAACGAAATGAACTAGCAAGTTATATTCTTAAGGCGTTGACTCTGCAGCAACTGCCTCCAATGTTACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTAGCATTTATCACAAGGCAAATGGTGGAAGCACAGAGAGCAGTGGGTTGGGAGAAGATTTTGATTCTCTAACTAATTACATGACTTCTTCGCATTCTAAGTTTCTCCGCCAATGGGATCGATTGATTGACTTAGAAGCTAAAGAGACTGAGATTTTAAGGAAAGAGGTCTGGCAATCACATAGTTCAAAGAGTTCAAACAGTAGTGGTCTTTCTTCTATTGTTCTTGACTCACTAGGAATACCTCTTGAGAAATCCCTTAAAGATAATCAATTCACTTATCGTTTCATACAACAAGATTCTTCTTCTAACCTCTATGAAGTTTCCGATATGTCTTCTAGTGTCTCATTGAAAAATGATTTAGATTCCACACTTCGAAGTGGAGATCATGTGATACTGCGTAATCAATCTAGCCATCAAATTATTGCTAAAGGGGTGATATCCGATATTAGTCCAAATCATGTATCTGTTTCCTTTTCAAAGCGATTACGAATCCCCAGGAGTTCTTCCAGTGTAAATGATCTCATTCAGCAGGTTTGGAGAATTGACAAGGATGAATCTGTGACTTCCTTTGCAACTATGCGGTTTAATCTTGTACAACTCTTTCTACAAAATGATCGAAGTGCTCATTTGCGGCGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGATCTATACTTAGCCAGGATCCTGCGATATCCTATGTTTGCTCAGAGAAGAGTTTGAATTATGACCAACGTAGAGCAATTCTCAAGATACTTACAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACGTCCACATTGGTCCATGCCGTGAAAGCCTTGTTGATTAGAGGAACATCCATTTTGCTTACTGCCTATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACAGGGGATTGATTTTGTACGAATTGGAAGACACGAAGTAGTGAATGAGGTGGTCAGAGAACACTGCCTCTCAGCAATGAGTGTACAAGGTGTTGAAGATATCAAAAGAAGGTTGGAACAAGTCAAAGTTGTCGCAGTTACTTGTCTTGGCATTTCTAGTCCCTTGCTTGCCAACACAAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACCTTACTAGTGTCCTTGGGTCCTCTGACGTTTGCTTCAATGTTTGTACTTGTTGGGGATCATTATCAACTGCCACCACTTGTCAATAGTACAGAAGCCCGAGAGAATGGCATGGGGATAAGTTTGTTCTGTAGGCTCTCAGAAGCCCATCCACAGGCTATTTTAGCCTTACAGAGTCAGTATCGTATGTGTCAAGACATCATGGACCTTTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCAGTGGAGGTAGCTAATGCAAAACTTGAGTTTTCAGACTTAAGCTGTGACTTTCCTTGGCTAGAACATGTTTTGAATCCTCGAAGACCTGTGATATTTATTGATACTGACAAGTTGCCGGCTTTAGAGGCAAGAGATCAGAAGGTTGTGAATAACCCTATTGAAGCTCAAATAATTGCTGAGATTGCAAAGGAATTAGTTAAAAATGGAATCGGAAAAGAACACATTGGCATTATTACTCCATATAATTCACAGGCAAACGTCATCCGCCATTGCACGACTTCCTTGGCGATACTGACTTCCTTGGAGATACATACGATTGACAAATACCAGGGTAGAGATAAGGACTGTATATTATTATCTTTTGTAAGGTCTACTGAAAACCCAACAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAAAAAGTTGATCATGGTAGGGTCTCGGAGAACCCTATCAAAGGTTCCTTTACTTAAACTTCTTATAAGCAAAGTTGAGGAGCAAACAGGAATTTTAATTTTGTCTAAGAAGGATATATATCGAAAAGGTGAGCTCAAGAGATGTTCCCAACTCAGATGA 3954 0.4272 MPPKKKKLNTEQPSKFGIQHFFDLASQKYHHLQPHTTTTAATATSTRTAATATSTSTAATATSISTAAATTSTSTAVATSTSTAVATSTTTSTINSPQQPDEVSSQTRFNFSPGMLVKQSQDDAVNEVTWKISPVNERLLAVSKHTPEVIKALAASSKLNLSAIRNDSGKETCLDKVASPTPKVPLSFKRINLALDVIGQSPFRTPPSLSYRPDKVQRSKDIEHKRPCDRPLLRQNKKALLELLDQVEDAIAIDDAPVCNSNTYSFKVPQSQAYELPVKVRPAVEMTKSHLPKEGVDVFSNSNYLVLEVSELRSADSSAAQCSSYKVLRLLNEQTGEERAVNLWNEWSCCVISPGDTVHVIGQFDEGGNCDIDRDKNFLIVHPDILMSGTRVASSFSCPRRTVLDERLKNNDYSTAALAGTMLHQIFQAGLTNDHPTVNFMEDYAEVVLQKNIESLYACGVNENDIRKTMRDAIPRLLSWIIRFKNMEERKDPNVKFGFDNGPKNVGISEVIDIEEMVWAPKYGLKGMIDASVRVKIQSQRDEQEEKIMPVEFKTGKTPNSQSSVEHSAQVILYTLLMSERYQTTVDSGLLYYLQSDQTQGIVVQRSDLTGLIMQRNELASYILKALTLQQLPPMLQSPSICRGCRHLNVCSIYHKANGGSTESSGLGEDFDSLTNYMTSSHSKFLRQWDRLIDLEAKETEILRKEVWQSHSSKSSNSSGLSSIVLDSLGIPLEKSLKDNQFTYRFIQQDSSSNLYEVSDMSSSVSLKNDLDSTLRSGDHVILRNQSSHQIIAKGVISDISPNHVSVSFSKRLRIPRSSSSVNDLIQQVWRIDKDESVTSFATMRFNLVQLFLQNDRSAHLRRMIVDLEAPRFDSGSILSQDPAISYVCSEKSLNYDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEVVNEVVREHCLSAMSVQGVEDIKRRLEQVKVVAVTCLGISSPLLANTRFDVCIMDEAGQTTLLVSLGPLTFASMFVLVGDHYQLPPLVNSTEARENGMGISLFCRLSEAHPQAILALQSQYRMCQDIMDLSNALIYGDRLRCGSVEVANAKLEFSDLSCDFPWLEHVLNPRRPVIFIDTDKLPALEARDQKVVNNPIEAQIIAEIAKELVKNGIGKEHIGIITPYNSQANVIRHCTTSLAILTSLEIHTIDKYQGRDKDCILLSFVRSTENPTSCAASLLGDWHRINVALTRAKKKLIMVGSRRTLSKVPLLKLLISKVEEQTGILILSKKDIYRKGELKRCSQLR 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3474g00003 1317 PANTHER DNA2/NAM7 HELICASE FAMILY 250 1289 IPR045055 -
Vium3474g00003 1317 Pfam Domain of unknown function DUF83 543 652 IPR022765 -
Vium3474g00003 1317 Gene3D - 388 652 IPR011604 -
Vium3474g00003 1317 Pfam AAA domain 894 985 IPR041677 GO:0004386
Vium3474g00003 1317 Pfam AAA domain 994 1061 IPR041677 GO:0004386
Vium3474g00003 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 1282 IPR027417 -
Vium3474g00003 1317 CDD DEXXQc_DNA2 893 1093 IPR026851 GO:0017116
Vium3474g00003 1317 Pfam DNA replication factor Dna2 333 535 IPR014808 -
Vium3474g00003 1317 CDD DNA2_N-like 388 623 - -
Vium3474g00003 1317 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 836 985 - -
Vium3474g00003 1317 CDD SF1_C_Upf1 1094 1291 IPR047187 -
Vium3474g00003 1317 MobiDBLite consensus disorder prediction 78 106 - -
Vium3474g00003 1317 Pfam AAA domain 1071 1274 IPR041679 -
Vium3474g00003 1317 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 990 1091 - -
Vium3474g00003 1317 Gene3D - 819 1091 IPR027417 -
Vium3474g00003 1317 Gene3D - 1092 1307 IPR027417 -
Vium3474g00003 1317 FunFam DNA replication helicase 1092 1309 - -
Vium3474g00003 1317 FunFam DNA replication helicase Dna2 499 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3474g00003 Vium-Chr3474 36650 55378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3474g00003 1 1035 Core DNA Replication Machinery Family AT1G08840 54.140 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3474g00003 K10742 - gmx:100799415 2003.02