Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3474g00001 ATGGGTTCTGCAAGAAACTCCAATCCAAATCCATATCCATGGACTCCAAAGGATTGTTCTGAAGGAATCTGCAGCATCTACTGCCCCCAGTGGTGTTACATAGTCTACTCCCCTCCTCCTCCTTCACTCTTCTTTGGTGCTAATGCTGATGCTGATGATCCTTCAGGATTTCAGTTTTCTCCTCTCATAGTTGCTGTGATTGGAATATTAGCCAGCACTTTCATATTGGTCACATACTACACCATCATCTCAAGGTTCTGCAGACGCAGCACCATCATGCAATCAAATGATTCTGCACCAGAAGAAGATGGGAGCAGTGAACTGGGTCAGGTTTCTTCTTCCTCAAACTCTGGTTTGGATGAGGCTCTCATCAAATCCATCACAGTCTGCAAATACACCAAAGGGGTGGTGGAGGCTCATGATTGTTCGGTTTGTTTGAGTGAGTTTGAAGAGAATGAGAGTTTGAGATTGTTGCCAAAATGCAACCATGCGTTTCATCTCCCTTGCATTGATCCTTGGCTCAAATCTCATGCCTCTTGCCCCTTGTGCCGTTCCACCATCACCATTGTTTGCCCAAATCCTGCCATGGAACCGCCACCAACACTCACTGTTAATGCCTTGGAATAACAGCATAGAAGTAGCCATGTTCTTGTTGTGGTTGTTCAGAGCTCCGAGCAGCAGCATAAGGTGCTAAGTTTTGATTCTCACACTTTCAATGAGACTGAAGGGTAG 732 0.4563 MGSARNSNPNPYPWTPKDCSEGICSIYCPQWCYIVYSPPPPSLFFGANADADDPSGFQFSPLIVAVIGILASTFILVTYYTIISRFCRRSTIMQSNDSAPEEDGSSELGQVSSSSNSGLDEALIKSITVCKYTKGVVEAHDCSVCLSEFEENESLRLLPKCNHAFHLPCIDPWLKSHASCPLCRSTITIVCPNPAMEPPPTLTVNALEXQHRSSHVLVVVVQSSEQQHKVLSFDSHTFNETEG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3474g00001 243 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vium3474g00001 243 Pfam Ring finger domain 141 184 IPR001841 -
Vium3474g00001 243 FunFam E3 ubiquitin-protein ligase ATL6 108 189 - -
Vium3474g00001 243 SMART ring_2 142 183 IPR001841 -
Vium3474g00001 243 PANTHER RING-H2 FINGER PROTEIN ATL16 54 224 IPR044600 GO:0016567|GO:0016740
Vium3474g00001 243 CDD RING-H2_EL5-like 141 184 - -
Vium3474g00001 243 SUPERFAMILY RING/U-box 129 193 - -
Vium3474g00001 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 189 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3474g00001 Vium-Chr3474 32759 33916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3474g00001 1 187 C3H Transcription Factor Family AT3G03550 52.857 3.93e-62 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3474g00001 - - vun:114168871 414.461